Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G346700.1 | |
| TraesCS2B01G365000.1 | |
| TraesCS2D01G345400.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G65990.1 | TraesCS2A01G346700.1 | AT1G27300.1 | 21798944 |
| AT5G65990.1 | TraesCS2B01G365000.1 | AT1G27300.1 | 21798944 |
| AT5G65990.1 | TraesCS2D01G345400.1 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G421800.1 | Wheat | plasma membrane | 97.64 | 97.64 |
| TraesCS2D01G400900.1 | Wheat | plasma membrane | 97.4 | 97.4 |
| Os04t0565500-01 | Rice | cytosol, plasma membrane, plastid | 86.52 | 86.12 |
| OQU82139 | Sorghum | peroxisome | 81.32 | 80.19 |
| TraesCS6A01G254100.1 | Wheat | plasma membrane | 76.83 | 77.2 |
| EES12671 | Sorghum | plastid | 86.29 | 73.59 |
| Zm00001d026121_P001 | Maize | cytosol, peroxisome, plasma membrane, plastid | 84.4 | 72.12 |
| GSMUA_Achr1P02810_001 | Banana | cytosol, plasma membrane, vacuole | 65.72 | 70.56 |
| GSMUA_Achr5P11060_001 | Banana | plasma membrane | 61.47 | 65.66 |
| GSMUA_AchrUn_... | Banana | plasma membrane, plastid, vacuole | 63.36 | 64.11 |
| VIT_07s0031g02140.t01 | Wine grape | plasma membrane | 62.65 | 62.8 |
| GSMUA_Achr4P25490_001 | Banana | plasma membrane | 57.68 | 62.24 |
| PGSC0003DMT400045065 | Potato | plasma membrane, plastid | 60.52 | 60.81 |
| VIT_03s0038g03900.t01 | Wine grape | plasma membrane | 60.76 | 60.33 |
| CDY70145 | Canola | plasma membrane | 56.97 | 59.8 |
| CDY21456 | Canola | plasma membrane | 56.97 | 59.8 |
| Bra000591.1-P | Field mustard | plasma membrane | 56.74 | 59.41 |
| PGSC0003DMT400086252 | Potato | plasma membrane | 59.57 | 59.29 |
| Solyc02g082510.1.1 | Tomato | plasma membrane | 59.34 | 59.06 |
| AT2G42005.1 | Thale cress | plasma membrane | 57.21 | 58.6 |
| PGSC0003DMT400048045 | Potato | plasma membrane | 59.1 | 58.55 |
| AT4G38250.1 | Thale cress | plasma membrane | 59.57 | 57.8 |
| Solyc03g032090.1.1 | Tomato | plasma membrane | 58.16 | 57.61 |
| CDY59097 | Canola | plastid | 59.34 | 56.66 |
| PGSC0003DMT400094217 | Potato | plasma membrane | 56.5 | 56.64 |
| AT5G65990.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 56.74 | 56.21 |
| CDY54797 | Canola | plastid | 58.87 | 55.96 |
| KRH39423 | Soybean | plasma membrane | 56.26 | 55.61 |
| Bra033558.1-P | Field mustard | plasma membrane | 47.04 | 55.59 |
| Bra029326.1-P | Field mustard | peroxisome | 55.79 | 55.14 |
| CDY42861 | Canola | peroxisome | 55.79 | 55.14 |
| CDY47026 | Canola | peroxisome, plastid | 55.32 | 54.29 |
| KRH28932 | Soybean | cytosol, plasma membrane | 45.86 | 53.89 |
| Solyc10g048180.1.1 | Tomato | plasma membrane | 53.66 | 53.16 |
| Solyc02g082520.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 51.3 | 51.79 |
| PGSC0003DMT400033422 | Potato | plasma membrane | 52.48 | 51.39 |
| TraesCS2A01G279700.1 | Wheat | plasma membrane | 35.7 | 35.95 |
| TraesCS5A01G176900.1 | Wheat | plasma membrane | 35.46 | 35.63 |
| TraesCS5A01G472500.1 | Wheat | plasma membrane | 33.33 | 33.49 |
| TraesCS5A01G472600.1 | Wheat | plasma membrane | 33.33 | 33.18 |
| TraesCS2A01G339100.1 | Wheat | plasma membrane | 24.11 | 24.0 |
| TraesCS7A01G188100.1 | Wheat | plasma membrane | 22.22 | 23.56 |
| TraesCS2A01G338600.1 | Wheat | plasma membrane | 24.35 | 23.41 |
| TraesCS4A01G018400.1 | Wheat | peroxisome, plasma membrane, vacuole | 23.4 | 22.97 |
| TraesCS2A01G282000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 21.51 | 22.36 |
| TraesCS4A01G018500.1 | Wheat | peroxisome, plasma membrane, vacuole | 22.46 | 22.04 |
| TraesCS2A01G338800.1 | Wheat | plasma membrane | 23.17 | 21.92 |
| TraesCS6A01G348300.2 | Wheat | cytosol, plasma membrane, vacuole | 23.88 | 21.17 |
| TraesCS4A01G018300.1 | Wheat | peroxisome, plasma membrane, vacuole | 20.09 | 20.94 |
| TraesCS6A01G348400.1 | Wheat | cytosol, peroxisome, plasma membrane | 25.06 | 20.04 |
| TraesCS2A01G052500.1 | Wheat | plasma membrane | 23.88 | 18.23 |
| TraesCS4A01G240700.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 18.68 | 17.48 |
| TraesCS5A01G081500.1 | Wheat | plasma membrane | 24.35 | 17.25 |
| TraesCS6A01G002400.1 | Wheat | cytosol, nucleus, plasma membrane | 22.7 | 16.96 |
| TraesCS2A01G279600.1 | Wheat | plasma membrane | 0.71 | 0.85 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G403800.1 | EnsemblPlantsGene:TraesCS2A01G403800 | InterPro:AA_transpt_TM | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF259 | PFAM:PF01490 |
| SEG:seg | TMHMM:TMhelix | MapMan:24.2.3.4.4 | : | : | : |
Description
No Description!
Coordinates
chr2A:+:659323650..659324921
Molecular Weight (calculated)
44355.1 Da
IEP (calculated)
7.162
GRAVY (calculated)
0.848
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFDKEASSS SSGLDAAALL PKHGGAGVGA RLSSQPKTFA NVFIAVVGSG VLGLPYTFSR TGWAAGSILL LAVAGLTFHC MMLLVACRRR LADEHPKIAS
101: FGDLGAAVYG AAGRHTVDAM LVLSQASFCV GYLIFIANTL AHLHPIGDPS ASSPLLTAKA LFIWVMLPFQ LGLNSIKTLT LLAPLSIFAD VVDLGAMGVV
201: LGQDVSTWLS EKPPVFAFGG PAELLYGLGV AVYAFEGIGM VLPLEAEAAD KRKFGGTLGL SMVFIAVMYG LFGAMGYLAF GASTRDIITT NLGAGWLSVA
301: VQLGLCINLF FTMPVMMNPV YEVAERLLYG KRYAWWLRWI LVVFVGLMAM LVPNFADFLS LVGSSVCVLL GFVLPAAFHM KVLGADIGWP ALVADVAVVV
401: VGLALSASGT WTSLAQMFGA PNA
101: FGDLGAAVYG AAGRHTVDAM LVLSQASFCV GYLIFIANTL AHLHPIGDPS ASSPLLTAKA LFIWVMLPFQ LGLNSIKTLT LLAPLSIFAD VVDLGAMGVV
201: LGQDVSTWLS EKPPVFAFGG PAELLYGLGV AVYAFEGIGM VLPLEAEAAD KRKFGGTLGL SMVFIAVMYG LFGAMGYLAF GASTRDIITT NLGAGWLSVA
301: VQLGLCINLF FTMPVMMNPV YEVAERLLYG KRYAWWLRWI LVVFVGLMAM LVPNFADFLS LVGSSVCVLL GFVLPAAFHM KVLGADIGWP ALVADVAVVV
401: VGLALSASGT WTSLAQMFGA PNA
001: MGFQNEASSS SYTLKIPPPA REDSPLLGKG PPLSSQFKTF ANVFIAVVGA GVLGLPYAFK RTGWLMGVLL LVSVSVLTHH CMMLLVYTRR KLDSFNAGIS
101: KIGSFGDLGF AVCGSLGRIV VDLFIILSQA GFCVGYLIFI GTTLANLSDP ESPTSLRHQF TRLGSEFLGV SSKSLYIWGC FPFQLGLNSI KTLTHLAPLS
201: IFADIVDLGA MAVVIVEDSM IILKQRPDVV AFGGMSLFLY GMGVAVYSFE GVGMVLPLES EMKDKDKFGK VLALGMGFIS LIYIAFGILG YLAFGEDTMD
301: IITANLGAGL VSTVVQLGLC INLFFTFPLM MNPVFEIVER RFSRGMYSAW LRWVLVLAVT LVALFVPNFA DFLSLVGSST CCVLGFVLPA LFHLLVFKEE
401: MGWLQWSSDT AIVVLGVVLA VSGTWSSLSE IFSVKV
101: KIGSFGDLGF AVCGSLGRIV VDLFIILSQA GFCVGYLIFI GTTLANLSDP ESPTSLRHQF TRLGSEFLGV SSKSLYIWGC FPFQLGLNSI KTLTHLAPLS
201: IFADIVDLGA MAVVIVEDSM IILKQRPDVV AFGGMSLFLY GMGVAVYSFE GVGMVLPLES EMKDKDKFGK VLALGMGFIS LIYIAFGILG YLAFGEDTMD
301: IITANLGAGL VSTVVQLGLC INLFFTFPLM MNPVFEIVER RFSRGMYSAW LRWVLVLAVT LVALFVPNFA DFLSLVGSST CCVLGFVLPA LFHLLVFKEE
401: MGWLQWSSDT AIVVLGVVLA VSGTWSSLSE IFSVKV
Arabidopsis Description
AVT3CAmino acid transporter AVT3C [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.