Factsheet for TraesCS4A01G018500.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, plasma membrane

Predictor Summary:

peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane, vacuole
Any Predictor:	peroxisome, plasma membrane, vacuole
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G018400.1	Wheat	peroxisome, plasma membrane, vacuole	91.18	91.18
TraesCS4A01G018300.1	Wheat	peroxisome, plasma membrane, vacuole	83.53	88.67
Os01t0597600-01	Rice	peroxisome, plasma membrane, vacuole	77.73	79.01
OQU87120	Sorghum	peroxisome, plasma membrane, vacuole	77.96	75.85
TraesCS2A01G339100.1	Wheat	plasma membrane	51.74	52.47
TraesCS2A01G338600.1	Wheat	plasma membrane	53.36	52.27
GSMUA_Achr6P35440_001	Banana	plasma membrane	51.97	51.49
TraesCS2A01G338800.1	Wheat	plasma membrane	53.36	51.45
VIT_01s0026g02500.t01	Wine grape	plasma membrane	48.03	50.37
PGSC0003DMT400019843	Potato	peroxisome, plasma membrane, plastid, vacuole	16.94	48.67
TraesCS7A01G188100.1	Wheat	plasma membrane	44.55	48.12
TraesCS2A01G282000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	43.85	46.44
Solyc05g053970.2.1	Tomato	plasma membrane	37.59	46.02
Solyc06g061270.1.1	Tomato	cytosol, plasma membrane	22.04	45.24
Solyc05g050440.2.1	Tomato	extracellular, plasma membrane, vacuole	17.87	45.03
KRG89633	Soybean	plasma membrane	41.3	43.73
Solyc06g061260.1.1	Tomato	plasma membrane	19.49	43.52
PGSC0003DMT400082135	Potato	plasma membrane	9.74	41.18
Zm00001d044387_P001	Maize	nucleus	76.33	38.43
TraesCS6A01G348300.2	Wheat	cytosol, plasma membrane, vacuole	36.43	32.91
TraesCS6A01G348400.1	Wheat	cytosol, peroxisome, plasma membrane	38.05	31.0
TraesCS2A01G052500.1	Wheat	plasma membrane	37.82	29.42
TraesCS6A01G002400.1	Wheat	cytosol, nucleus, plasma membrane	37.82	28.8
TraesCS4A01G240700.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	30.16	28.76
TraesCS5A01G081500.1	Wheat	plasma membrane	38.05	27.47
TraesCS5A01G472600.1	Wheat	plasma membrane	25.29	25.65
TraesCS5A01G472500.1	Wheat	plasma membrane	24.83	25.42
TraesCS5A01G176900.1	Wheat	plasma membrane	23.67	24.23
TraesCS2A01G279700.1	Wheat	plasma membrane	22.74	23.33
TraesCS6A01G254100.1	Wheat	plasma membrane	22.04	22.57
TraesCS2A01G403800.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	22.04	22.46
TraesCS2A01G279600.1	Wheat	plasma membrane	0.7	0.85

Protein Annotations

EnsemblPlants:TraesCS4A01G018500.1	EnsemblPlantsGene:TraesCS4A01G018500	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF297	PFAM:PF01490
SEG:seg	TMHMM:TMhelix	MapMan:24.2.3.4.7	:	:	:

Description

No Description!

Coordinates

chr4A:+:12153546..12155051

Molecular Weight (calculated)

45755.6 Da

IEP (calculated)

8.955

GRAVY (calculated)

0.738

Length

431 amino acids

Sequence
(BLAST)

001: MEDHTTSRLA ATASPLGEPL LTATGQRADR DAEAQLPPYR SAGASFSRTC LNLTNAVSGI GVLTMPYAVS RGGWLSLALF ALVGAVCYYT GTLMARCMRA
101: DGSVATYPDI GQLAFGAAGR RTVAVFMYVE LYLVAISFLV LEGDNLDKLF PGAGVELLPG YRLRGKQLFI VLAGAVVLPT TWLRNLGVLA YVSALGLVAS
201: AALTASLVWA GVSESGFRTN GNVLNLAGLP ASLGLYFVCF TGHVVFPTIY SSMKNRERFS QVLLISSVLC GLNYGFTAVL GYLIYGEDVQ SQVTLNLPSG
301: RLYTKIAIVM TLINPLTKYA LLVAPITSAI EERFSLMGSG PARVAVSTAV LVSTVAVACM VPFFGFLMSF IGSFLSVMAT VFFPCLCYLK IYKAKGLRRV
401: EVAAIVGILL LGAFVAITGT YTSLLDIIGT F

Best Arabidopsis Sequence Match ( AT3G28960.1 )
(BLAST)

001: MEEDNQEIQR DNVGSSSFFK TCFNALNALS GIGILSVPYS LARGGWLSLS LLLLLAVTAF YTSLLITKCM NADRNIKTYP DIGERAFGRP GRIIVSVFMH
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV

Arabidopsis Description

AVT1IAmino acid transporter AVT1I [Source:UniProtKB/Swiss-Prot;Acc:F4J1Q9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.