Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G346700.1 | |
| TraesCS2B01G365000.1 | |
| TraesCS2D01G345400.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G65990.1 | TraesCS2A01G346700.1 | AT1G27300.1 | 21798944 |
| AT5G65990.1 | TraesCS2B01G365000.1 | AT1G27300.1 | 21798944 |
| AT5G65990.1 | TraesCS2D01G345400.1 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G235500.1 | Wheat | plasma membrane | 99.29 | 99.29 |
| TraesCS6B01G271500.1 | Wheat | plasma membrane | 98.34 | 98.34 |
| HORVU6Hr1G064740.1 | Barley | plasma membrane | 97.15 | 97.15 |
| EES07473 | Sorghum | plasma membrane | 85.51 | 84.51 |
| Zm00001d017557_P001 | Maize | plastid | 85.51 | 83.33 |
| TraesCS2A01G403800.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 77.2 | 76.83 |
| Os02t0670900-02 | Rice | endoplasmic reticulum, plasma membrane, plastid | 87.41 | 75.56 |
| GSMUA_Achr1P02810_001 | Banana | cytosol, plasma membrane, vacuole | 64.61 | 69.04 |
| GSMUA_Achr5P11060_001 | Banana | plasma membrane | 62.0 | 65.91 |
| GSMUA_Achr4P25490_001 | Banana | plasma membrane | 59.86 | 64.29 |
| GSMUA_AchrUn_... | Banana | plasma membrane, plastid, vacuole | 63.18 | 63.64 |
| PGSC0003DMT400045065 | Potato | plasma membrane, plastid | 62.23 | 62.23 |
| VIT_07s0031g02140.t01 | Wine grape | plasma membrane | 61.05 | 60.9 |
| VIT_03s0038g03900.t01 | Wine grape | plasma membrane | 61.52 | 60.8 |
| CDY70145 | Canola | plasma membrane | 58.19 | 60.79 |
| CDY21456 | Canola | plasma membrane | 58.19 | 60.79 |
| Bra000591.1-P | Field mustard | plasma membrane | 57.96 | 60.4 |
| Solyc02g082510.1.1 | Tomato | plasma membrane | 60.81 | 60.24 |
| PGSC0003DMT400086252 | Potato | plasma membrane | 60.81 | 60.24 |
| AT2G42005.1 | Thale cress | plasma membrane | 58.67 | 59.81 |
| PGSC0003DMT400048045 | Potato | plasma membrane | 59.38 | 58.55 |
| Solyc03g032090.1.1 | Tomato | plasma membrane | 59.14 | 58.31 |
| AT4G38250.1 | Thale cress | plasma membrane | 60.33 | 58.26 |
| PGSC0003DMT400094217 | Potato | plasma membrane | 57.72 | 57.58 |
| CDY59097 | Canola | plastid | 60.57 | 57.56 |
| CDY54797 | Canola | plastid | 60.09 | 56.85 |
| Bra033558.1-P | Field mustard | plasma membrane | 47.98 | 56.42 |
| AT5G65990.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 55.34 | 54.57 |
| Bra029326.1-P | Field mustard | peroxisome | 55.34 | 54.44 |
| CDY42861 | Canola | peroxisome | 55.11 | 54.21 |
| KRH39423 | Soybean | plasma membrane | 54.87 | 53.97 |
| Solyc10g048180.1.1 | Tomato | plasma membrane | 54.39 | 53.63 |
| CDY47026 | Canola | peroxisome, plastid | 54.87 | 53.6 |
| Solyc02g082520.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 53.21 | 53.46 |
| KRH28932 | Soybean | cytosol, plasma membrane | 44.18 | 51.67 |
| PGSC0003DMT400033422 | Potato | plasma membrane | 52.97 | 51.62 |
| TraesCS5A01G176900.1 | Wheat | plasma membrane | 36.34 | 36.34 |
| TraesCS5A01G472500.1 | Wheat | plasma membrane | 35.63 | 35.63 |
| TraesCS2A01G279700.1 | Wheat | plasma membrane | 35.39 | 35.48 |
| TraesCS5A01G472600.1 | Wheat | plasma membrane | 34.68 | 34.35 |
| TraesCS2A01G339100.1 | Wheat | plasma membrane | 25.65 | 25.41 |
| TraesCS2A01G338600.1 | Wheat | plasma membrane | 25.89 | 24.77 |
| TraesCS4A01G018400.1 | Wheat | peroxisome, plasma membrane, vacuole | 23.99 | 23.43 |
| TraesCS2A01G338800.1 | Wheat | plasma membrane | 24.7 | 23.27 |
| TraesCS2A01G282000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 22.33 | 23.1 |
| TraesCS7A01G188100.1 | Wheat | plasma membrane | 21.85 | 23.06 |
| TraesCS4A01G018500.1 | Wheat | peroxisome, plasma membrane, vacuole | 22.57 | 22.04 |
| TraesCS6A01G348300.2 | Wheat | cytosol, plasma membrane, vacuole | 24.7 | 21.8 |
| TraesCS4A01G018300.1 | Wheat | peroxisome, plasma membrane, vacuole | 20.43 | 21.18 |
| TraesCS6A01G348400.1 | Wheat | cytosol, peroxisome, plasma membrane | 25.89 | 20.6 |
| TraesCS2A01G052500.1 | Wheat | plasma membrane | 25.18 | 19.13 |
| TraesCS4A01G240700.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 19.95 | 18.58 |
| TraesCS6A01G002400.1 | Wheat | cytosol, nucleus, plasma membrane | 24.23 | 18.02 |
| TraesCS5A01G081500.1 | Wheat | plasma membrane | 23.52 | 16.58 |
| TraesCS2A01G279600.1 | Wheat | plasma membrane | 0.71 | 0.85 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G254100.1 | EnsemblPlantsGene:TraesCS6A01G254100 | InterPro:AA_transpt_TM | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF259 | PFAM:PF01490 |
| SEG:seg | TMHMM:TMhelix | MapMan:24.2.3.4.4 | : | : | : |
Description
No Description!
Coordinates
chr6A:+:470212855..470214120
Molecular Weight (calculated)
44608.3 Da
IEP (calculated)
6.776
GRAVY (calculated)
0.869
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLGSDASSS SSRLDSAPLL PHHSAEGGHL SSQPKTFANV FIAVVGAGVL GLPYTFSRTG WAAGSILLLS VALLTFYCMM LLVACRRRLA DDHPKMLSSF
101: GDLGDAVFGA PGRLAVDTML VLSQASFCVG YLIFISNTMA HLYPVFAPSS NVFLSPKALF IYAMLPFQLG LNSIKTLTLL APLSIFADVV DLGAMGVVVG
201: QDVSTWLAAH PPVAAFGAPA ALLYGAGVSV YAFEGVCMVL PLEAEAADKK KFGATLGLSM AFIAVMYGLF GVMGYVAFGD ATRDIITTNL GSGWLSAAVQ
301: LGLCINLFFT MPVMMNPVYE VAERLFHGKR YCWWMRWVLV VTVGLAAMLV PNFTDFLSLV GSSVCVLLGF VLPATFHIKV FGAEMGWVGV LSDVLLVVLG
401: LVLAVFGTYS SLVQIFHSSS A
101: GDLGDAVFGA PGRLAVDTML VLSQASFCVG YLIFISNTMA HLYPVFAPSS NVFLSPKALF IYAMLPFQLG LNSIKTLTLL APLSIFADVV DLGAMGVVVG
201: QDVSTWLAAH PPVAAFGAPA ALLYGAGVSV YAFEGVCMVL PLEAEAADKK KFGATLGLSM AFIAVMYGLF GVMGYVAFGD ATRDIITTNL GSGWLSAAVQ
301: LGLCINLFFT MPVMMNPVYE VAERLFHGKR YCWWMRWVLV VTVGLAAMLV PNFTDFLSLV GSSVCVLLGF VLPATFHIKV FGAEMGWVGV LSDVLLVVLG
401: LVLAVFGTYS SLVQIFHSSS A
001: MGLEEQGRAR EDTPLLGKGR PLSSKFKTFA NVFIAIVGAG VLGLPYAFKR TGWLMGLLTL FSVAALINHC MMLLVHIRRK LGVSNIGSFG DLGFAACGNL
101: GRFVVDILII LSQAGFCVGY LIFIGNTLAN LSKPTKSTTL MSLRHLMGVS PKSLYIWGCF PFQLGLNSIK TLTHLAPLSI FADVVDLGAM AVVIVEDIKI
201: TVVQRPQVVA FGGMSVFFYG MGVAVYAFEG VGMVLPLESE TKDKDKFGKV LALSMLFIAV MYGSFGVLGY MAFGDDTMDI ITANLGAGVV SSLVQLGLCI
301: NLFFTFPLMM NPVFEIVERR FWSGMYCVWL RWLLVLAVTL VALLVPNFAD FLSLVGSSVC CALGFVLPSL FHLMVFKDEM EWKQRALDVG ILLLGVILGV
401: SGTWSSLTEI FQE
101: GRFVVDILII LSQAGFCVGY LIFIGNTLAN LSKPTKSTTL MSLRHLMGVS PKSLYIWGCF PFQLGLNSIK TLTHLAPLSI FADVVDLGAM AVVIVEDIKI
201: TVVQRPQVVA FGGMSVFFYG MGVAVYAFEG VGMVLPLESE TKDKDKFGKV LALSMLFIAV MYGSFGVLGY MAFGDDTMDI ITANLGAGVV SSLVQLGLCI
301: NLFFTFPLMM NPVFEIVERR FWSGMYCVWL RWLLVLAVTL VALLVPNFAD FLSLVGSSVC CALGFVLPSL FHLMVFKDEM EWKQRALDVG ILLLGVILGV
401: SGTWSSLTEI FQE
Arabidopsis Description
AVT3BAmino acid transporter AVT3B [Source:UniProtKB/Swiss-Prot;Acc:F4ILY9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.