Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G189100.1 | Wheat | plasma membrane | 98.5 | 98.5 |
| TraesCS7B01G093100.1 | Wheat | plasma membrane | 98.25 | 98.25 |
| HORVU7Hr1G038300.27 | Barley | plasma membrane | 97.74 | 97.5 |
| KXG19641 | Sorghum | plasma membrane | 80.2 | 80.2 |
| Zm00001d037229_P001 | Maize | plasma membrane | 79.7 | 79.7 |
| Os06t0228500-01 | Rice | plasma membrane | 78.45 | 75.79 |
| TraesCS2A01G282000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 65.66 | 64.37 |
| GSMUA_Achr7P18140_001 | Banana | plasma membrane | 64.66 | 60.71 |
| Solyc06g061270.1.1 | Tomato | cytosol, plasma membrane | 30.33 | 57.62 |
| VIT_01s0026g02500.t01 | Wine grape | plasma membrane | 57.89 | 56.2 |
| Solyc05g050440.2.1 | Tomato | extracellular, plasma membrane, vacuole | 24.06 | 56.14 |
| Solyc05g053970.2.1 | Tomato | plasma membrane | 48.37 | 54.83 |
| PGSC0003DMT400019843 | Potato | peroxisome, plasma membrane, plastid, vacuole | 20.05 | 53.33 |
| TraesCS2A01G339100.1 | Wheat | plasma membrane | 52.88 | 49.65 |
| KRG89633 | Soybean | plasma membrane | 50.38 | 49.39 |
| Solyc06g061260.1.1 | Tomato | plasma membrane | 23.81 | 49.22 |
| TraesCS2A01G338600.1 | Wheat | plasma membrane | 52.63 | 47.73 |
| TraesCS2A01G338800.1 | Wheat | plasma membrane | 52.63 | 46.98 |
| TraesCS4A01G018500.1 | Wheat | peroxisome, plasma membrane, vacuole | 48.12 | 44.55 |
| PGSC0003DMT400082135 | Potato | plasma membrane | 11.28 | 44.12 |
| TraesCS4A01G018400.1 | Wheat | peroxisome, plasma membrane, vacuole | 47.12 | 43.62 |
| TraesCS4A01G018300.1 | Wheat | peroxisome, plasma membrane, vacuole | 41.85 | 41.13 |
| TraesCS6A01G348300.2 | Wheat | cytosol, plasma membrane, vacuole | 42.36 | 35.43 |
| TraesCS6A01G348400.1 | Wheat | cytosol, peroxisome, plasma membrane | 45.11 | 34.03 |
| TraesCS6A01G002400.1 | Wheat | cytosol, nucleus, plasma membrane | 44.36 | 31.27 |
| TraesCS4A01G240700.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 35.09 | 30.97 |
| TraesCS2A01G052500.1 | Wheat | plasma membrane | 41.85 | 30.14 |
| TraesCS5A01G081500.1 | Wheat | plasma membrane | 42.86 | 28.64 |
| TraesCS5A01G176900.1 | Wheat | plasma membrane | 24.56 | 23.28 |
| TraesCS2A01G279700.1 | Wheat | plasma membrane | 24.31 | 23.1 |
| TraesCS5A01G472500.1 | Wheat | plasma membrane | 23.56 | 22.33 |
| TraesCS2A01G403800.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 23.56 | 22.22 |
| TraesCS5A01G472600.1 | Wheat | plasma membrane | 23.31 | 21.88 |
| TraesCS6A01G254100.1 | Wheat | plasma membrane | 23.06 | 21.85 |
| TraesCS2A01G279600.1 | Wheat | plasma membrane | 0.75 | 0.85 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G188100.1 | EnsemblPlantsGene:TraesCS7A01G188100 | InterPro:AA_transpt_TM | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF280 | PFAM:PF01490 |
| SEG:seg | TMHMM:TMhelix | MapMan:24.2.3.4.7 | : | : | : |
Description
No Description!
Coordinates
chr7A:+:144128052..144129717
Molecular Weight (calculated)
42998.8 Da
IEP (calculated)
9.048
GRAVY (calculated)
0.853
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTSTPRKSG TSFLKTCFNG VNALSGVGIL SIPYALSQGG WLSVLMFTTI AIICFYTGIL LQRCIDSSSL VKTYPDIGEL AFGRKGRIIV AIFMYLELYL
101: VAIDFMILEG DNLEKLFPSV DFHVAGLKIG GKQGFVLIFS LLVLPTTWFR SLSALAYVSV GGIVASVILI ASVIWVGAFD GVGFHERGVL VHWAGIPTAM
201: SLYSFCFSGH AVFPMIYTGM SNRKMFPTVL LLCFIICTLS YGLMGVVGYL MYGESLKSQV TLNLPSRNLS SSIAIYTTLI NPFTKFALLV TPIAEAIEDT
301: LHVGKNKAVS VSIRTSLVVS TTIMALVVPY FAYAVALTGS FLSGTATMLL PCACYLKIRS RTCRKVGFEQ VVCVGIIVVG VGLVVVGTSS SLKQIIQSL
101: VAIDFMILEG DNLEKLFPSV DFHVAGLKIG GKQGFVLIFS LLVLPTTWFR SLSALAYVSV GGIVASVILI ASVIWVGAFD GVGFHERGVL VHWAGIPTAM
201: SLYSFCFSGH AVFPMIYTGM SNRKMFPTVL LLCFIICTLS YGLMGVVGYL MYGESLKSQV TLNLPSRNLS SSIAIYTTLI NPFTKFALLV TPIAEAIEDT
301: LHVGKNKAVS VSIRTSLVVS TTIMALVVPY FAYAVALTGS FLSGTATMLL PCACYLKIRS RTCRKVGFEQ VVCVGIIVVG VGLVVVGTSS SLKQIIQSL
001: MEEDNQEIQR DNVGSSSFFK TCFNALNALS GIGILSVPYS LARGGWLSLS LLLLLAVTAF YTSLLITKCM NADRNIKTYP DIGERAFGRP GRIIVSVFMH
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV
Arabidopsis Description
AVT1IAmino acid transporter AVT1I [Source:UniProtKB/Swiss-Prot;Acc:F4J1Q9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.