Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, peroxisome, vacuole
Predictor Summary:
Predictor Summary:
- peroxisome 1
- extracellular 1
- golgi 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G018400.1 | Wheat | peroxisome, plasma membrane, vacuole | 89.16 | 83.99 |
| TraesCS4A01G018500.1 | Wheat | peroxisome, plasma membrane, vacuole | 88.67 | 83.53 |
| TraesCS4B01G285500.1 | Wheat | plasma membrane | 88.42 | 83.29 |
| TraesCS4D01G284500.1 | Wheat | plasma membrane | 67.98 | 75.0 |
| Os01t0597600-01 | Rice | peroxisome, plasma membrane, vacuole | 73.15 | 70.05 |
| OQU87120 | Sorghum | peroxisome, plasma membrane, vacuole | 73.89 | 67.72 |
| TraesCS2A01G339100.1 | Wheat | plasma membrane | 48.52 | 46.35 |
| TraesCS2A01G338600.1 | Wheat | plasma membrane | 49.51 | 45.68 |
| GSMUA_Achr6P35440_001 | Banana | plasma membrane | 48.77 | 45.52 |
| VIT_01s0026g02500.t01 | Wine grape | plasma membrane | 45.07 | 44.53 |
| TraesCS2A01G338800.1 | Wheat | plasma membrane | 49.01 | 44.52 |
| PGSC0003DMT400019843 | Potato | peroxisome, plasma membrane, plastid, vacuole | 16.01 | 43.33 |
| TraesCS7A01G188100.1 | Wheat | plasma membrane | 41.13 | 41.85 |
| TraesCS2A01G282000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 41.13 | 41.03 |
| Solyc05g053970.2.1 | Tomato | plasma membrane | 34.24 | 39.49 |
| Solyc05g050440.2.1 | Tomato | extracellular, plasma membrane, vacuole | 16.5 | 39.18 |
| KRG89633 | Soybean | plasma membrane | 38.67 | 38.57 |
| Solyc06g061260.1.1 | Tomato | plasma membrane | 18.23 | 38.34 |
| Solyc06g061270.1.1 | Tomato | cytosol, plasma membrane | 19.21 | 37.14 |
| Zm00001d044387_P001 | Maize | nucleus | 74.14 | 35.16 |
| PGSC0003DMT400082135 | Potato | plasma membrane | 8.37 | 33.33 |
| TraesCS6A01G348300.2 | Wheat | cytosol, plasma membrane, vacuole | 34.24 | 29.14 |
| TraesCS6A01G348400.1 | Wheat | cytosol, peroxisome, plasma membrane | 35.71 | 27.41 |
| TraesCS4A01G240700.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 29.56 | 26.55 |
| TraesCS2A01G052500.1 | Wheat | plasma membrane | 34.73 | 25.45 |
| TraesCS6A01G002400.1 | Wheat | cytosol, nucleus, plasma membrane | 35.22 | 25.27 |
| TraesCS5A01G081500.1 | Wheat | plasma membrane | 35.71 | 24.29 |
| TraesCS5A01G472600.1 | Wheat | plasma membrane | 23.65 | 22.59 |
| TraesCS5A01G472500.1 | Wheat | plasma membrane | 23.4 | 22.57 |
| TraesCS5A01G176900.1 | Wheat | plasma membrane | 22.17 | 21.38 |
| TraesCS6A01G254100.1 | Wheat | plasma membrane | 21.18 | 20.43 |
| TraesCS2A01G279700.1 | Wheat | plasma membrane | 20.94 | 20.24 |
| TraesCS2A01G403800.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 20.94 | 20.09 |
| TraesCS2A01G279600.1 | Wheat | plasma membrane | 0.49 | 0.56 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G018300.1 | EnsemblPlantsGene:TraesCS4A01G018300 | InterPro:AA_transpt_TM | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF297 | PFAM:PF01490 |
| SEG:seg | TMHMM:TMhelix | MapMan:24.2.3.4.7 | : | : | : |
Description
No Description!
Coordinates
chr4A:+:11841262..11844782
Molecular Weight (calculated)
42774.9 Da
IEP (calculated)
8.568
GRAVY (calculated)
0.752
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEHKTTGLA ATASPLGEPL LTATGKRVVD RDAEAQLPPY PSAGASFSRT CLNLTNAVSG IGVLSMPYAV SRGGWLSLAL FALVGTVCYY TGTLIARCML
101: ADGSVATYPD VGQLAFGAAG RRTVALFMYV ELYLLYIVLA GAVVLPTTWL KNLGVLAYVS ALGLVASAAL TASLVWAGVS ESGFRGSGNV LNLAGLPTSL
201: GLYFVCFTGH AVFPTIYSSM KNRERFSQVL LFSSVLCSLN YGLTAVLGYL IYGDDVQSQV TLNLPSGRLY TKIAIVMTLV NPLTKYALLV APITSAIEER
301: FSLMGSGPAR VAVSTAVLVS TVAVACMVPF FGFLMSFIGS FLSVMATVFF PCLCYLKIYK AKGLRRVEVA AIVAILMLGA FVADGKLDYG DAICGLQGCA
401: CLTTPR
101: ADGSVATYPD VGQLAFGAAG RRTVALFMYV ELYLLYIVLA GAVVLPTTWL KNLGVLAYVS ALGLVASAAL TASLVWAGVS ESGFRGSGNV LNLAGLPTSL
201: GLYFVCFTGH AVFPTIYSSM KNRERFSQVL LFSSVLCSLN YGLTAVLGYL IYGDDVQSQV TLNLPSGRLY TKIAIVMTLV NPLTKYALLV APITSAIEER
301: FSLMGSGPAR VAVSTAVLVS TVAVACMVPF FGFLMSFIGS FLSVMATVFF PCLCYLKIYK AKGLRRVEVA AIVAILMLGA FVADGKLDYG DAICGLQGCA
401: CLTTPR
001: MEEDNQEIQR DNVGSSSFFK TCFNALNALS GIGILSVPYS LARGGWLSLS LLLLLAVTAF YTSLLITKCM NADRNIKTYP DIGERAFGRP GRIIVSVFMH
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV
Arabidopsis Description
AVT1IAmino acid transporter AVT1I [Source:UniProtKB/Swiss-Prot;Acc:F4J1Q9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.