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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 8
  • golgi 5
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc05g050440.2.1 Tomato extracellular, plasma membrane, vacuole 47.16 97.08
PGSC0003DMT400082135 Potato plasma membrane 25.0 86.27
Solyc06g061260.1.1 Tomato plasma membrane 45.45 82.9
Solyc06g061270.1.1 Tomato cytosol, plasma membrane 40.62 68.1
VIT_01s0026g02500.t01 Wine grape plasma membrane 62.78 53.77
Solyc03g063030.2.1 Tomato plasma membrane 33.81 50.64
Zm00001d037229_P001 Maize plasma membrane 55.97 49.37
TraesCS7D01G189100.1 Wheat plasma membrane 55.11 48.62
Os06t0228500-01 Rice plasma membrane 56.82 48.43
TraesCS7A01G188100.1 Wheat plasma membrane 54.83 48.37
KRG89633 Soybean plasma membrane 55.68 48.16
KXG19641 Sorghum plasma membrane 54.55 48.12
GSMUA_Achr10P... Banana plasma membrane 59.94 47.95
TraesCS7B01G093100.1 Wheat plasma membrane 54.26 47.87
HORVU7Hr1G038300.27 Barley plasma membrane 54.26 47.75
TraesCS1B01G058900.1 Wheat plasma membrane 57.67 47.43
TraesCS2A01G338600.1 Wheat plasma membrane 59.09 47.27
HORVU2Hr1G080430.3 Barley cytosol 58.81 47.05
TraesCS2B01G343300.2 Wheat plasma membrane 58.81 47.05
TraesCS2D01G324400.2 Wheat plasma membrane 58.52 46.82
TraesCS2A01G282000.1 Wheat endoplasmic reticulum, plasma membrane, plastid, vacuole 52.84 45.7
TraesCS2D01G324000.1 Wheat endoplasmic reticulum, golgi, plasma membrane 55.11 45.65
HORVU2Hr1G080420.1 Barley plasma membrane 55.11 45.65
HORVU2Hr1G080390.1 Barley plasma membrane 55.11 45.65
TraesCS2D01G280800.1 Wheat endoplasmic reticulum, plasma membrane, plastid, vacuole 52.56 45.45
HORVU2Hr1G069080.4 Barley cytosol, peroxisome, plasma membrane 52.56 45.45
TraesCS2B01G342900.1 Wheat plasma membrane 54.83 45.41
TraesCS2A01G339100.1 Wheat plasma membrane 54.83 45.41
TraesCS2B01G299200.1 Wheat plasma membrane 52.27 45.21
Os04t0460200-01 Rice endoplasmic reticulum 31.53 45.12
HORVU2Hr1G080350.5 Barley mitochondrion, plasma membrane, vacuole 55.68 44.44
TraesCS2A01G338800.1 Wheat plasma membrane 55.68 43.85
Solyc03g013440.2.1 Tomato plasma membrane 42.9 43.64
Solyc03g013160.2.1 Tomato plasma membrane 52.27 43.19
TraesCS2D01G324300.1 Wheat plasma membrane 54.55 42.95
Zm00001d003422_P001 Maize cytosol, plasma membrane, vacuole 55.68 42.79
TraesCS2B01G343200.2 Wheat plasma membrane 54.83 42.7
EES10943 Sorghum cytosol, peroxisome, plasma membrane 55.97 42.64
TraesCS3B01G499000.1 Wheat plasma membrane 49.43 42.54
Os05t0364700-00 Rice extracellular 18.18 41.56
TraesCS4D01G284500.1 Wheat plasma membrane 41.48 39.67
Os01t0597600-01 Rice peroxisome, plasma membrane, vacuole 47.44 39.39
Solyc03g063040.2.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 13.64 39.02
OQU87120 Sorghum peroxisome, plasma membrane, vacuole 48.01 38.15
TraesCS4D01G284600.1 Wheat peroxisome, plasma membrane, vacuole 46.59 37.96
TraesCS4B01G285500.1 Wheat plasma membrane 46.31 37.82
TraesCS4B01G285800.1 Wheat peroxisome, plasma membrane, vacuole 46.31 37.82
Os01t0597400-00 Rice cytosol, peroxisome, plasma membrane 47.44 37.7
TraesCS4A01G018500.1 Wheat peroxisome, plasma membrane, vacuole 46.02 37.59
TraesCS4A01G018400.1 Wheat peroxisome, plasma membrane, vacuole 45.74 37.35
EES01014 Sorghum plasma membrane 45.74 37.1
TraesCS4A01G018300.1 Wheat peroxisome, plasma membrane, vacuole 39.49 34.24
Solyc03g078150.2.1 Tomato peroxisome 44.32 29.71
Solyc10g084830.1.1 Tomato cytosol, peroxisome, plasma membrane 43.75 29.11
Solyc11g008440.1.1 Tomato cytosol, nucleus, plasma membrane 44.32 28.11
Solyc09g098380.1.1 Tomato plasma membrane 32.67 26.02
Zm00001d044387_P001 Maize nucleus 46.31 19.04
Solyc03g032090.1.1 Tomato plasma membrane 20.45 16.86
Solyc10g048180.1.1 Tomato plasma membrane 20.17 16.63
Solyc02g082520.1.1 Tomato cytosol, peroxisome, plasma membrane 19.6 16.47
Solyc02g082510.1.1 Tomato plasma membrane 19.03 15.76
Solyc03g063050.1.1 Tomato extracellular, plasma membrane 10.23 13.53
Os04t0460300-01 Rice plastid 0.0 0.0
Protein Annotations
EnsemblPlants:Solyc05g053970.2.1EnsemblPlantsGene:Solyc05g053970.2GO:GO:0003333GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0015171GO:GO:0016020GO:GO:0016021InterPro:AA_transpt_TM
PANTHER:PTHR22950PANTHER:PTHR22950:SF465PFAM:PF01490SignalP:SignalP-TMTMHMM:TMhelixUniParc:UPI0002766712
UniProt:K4C276MapMan:24.2.3.4.7::::
Description
No Description!
Coordinates
chr5:+:63976214..63977904
Molecular Weight (calculated)
38858.3 Da
IEP (calculated)
9.138
GRAVY (calculated)
0.974
Length
352 amino acids
Sequence
(BLAST)
001: MLLLLVAIIC CYTGILLQKC MSVSPSIKTY PDIGEFAFGN KGRILISIFL YLELYFVAIE FLILEGDNLQ KLFPNAKIHV GCVKIVGREV FVLLVAIIIL
101: PTTWLKSLGL LAYVSIGGVL ASIVLVFSIF WVGAMDGIGF EEKGVIWRWD GLISAISMYT FCYCGHAVFP TICNSMKDRS QFPKVLFVCF IVSTITYGSM
201: ATIGYLMYGQ NLMSQITLNL PTGKISSKIA IYTTLVNPIT KYALVVSPIA TAIEDKLPLR KSKFIVSYFI RTLLVISTVT VALTVPFFGY VMAFTGALLG
301: VTVSILLPCL CYLKIKKPSY LEIMFIVMIL IFGSSVTLSG TYTSLKNIIS HV
Best Arabidopsis Sequence Match ( AT3G28960.1 )
(BLAST)
001: MEEDNQEIQR DNVGSSSFFK TCFNALNALS GIGILSVPYS LARGGWLSLS LLLLLAVTAF YTSLLITKCM NADRNIKTYP DIGERAFGRP GRIIVSVFMH
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV
Arabidopsis Description
AVT1IAmino acid transporter AVT1I [Source:UniProtKB/Swiss-Prot;Acc:F4J1Q9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.