Factsheet for Os04t0460300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G080390.1	Barley	plasma membrane	0.66	0.71
HORVU2Hr1G080420.1	Barley	plasma membrane	0.66	0.71
TraesCS2A01G338800.1	Wheat	plasma membrane	0.44	0.45
TraesCS2D01G324300.1	Wheat	plasma membrane	0.22	0.22
TraesCS2B01G343200.2	Wheat	plasma membrane	0.22	0.22
Os11t0298000-00	Rice	mitochondrion, plastid	0.22	0.21
Os02t0670900-02	Rice	endoplasmic reticulum, plasma membrane, plastid	0.22	0.21
PGSC0003DMT400019843	Potato	peroxisome, plasma membrane, plastid, vacuole	0.0	0.0
VIT_01s0026g02500.t01	Wine grape	plasma membrane	0.0	0.0
PGSC0003DMT400082135	Potato	plasma membrane	0.0	0.0
Solyc05g050440.2.1	Tomato	extracellular, plasma membrane, vacuole	0.0	0.0
Solyc05g053970.2.1	Tomato	plasma membrane	0.0	0.0
Solyc06g061260.1.1	Tomato	plasma membrane	0.0	0.0
Solyc06g061270.1.1	Tomato	cytosol, plasma membrane	0.0	0.0
TraesCS2A01G339100.1	Wheat	plasma membrane	0.0	0.0
TraesCS2B01G342900.1	Wheat	plasma membrane	0.0	0.0
TraesCS2D01G324000.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	0.0	0.0
HORVU2Hr1G080350.5	Barley	mitochondrion, plasma membrane, vacuole	0.0	0.0
Os12t0574000-01	Rice	plasma membrane	0.0	0.0
Os07t0231400-01	Rice	plasma membrane	0.0	0.0
Os06t0228500-01	Rice	plasma membrane	0.0	0.0
Os05t0364700-00	Rice	extracellular	0.0	0.0
Os04t0565500-01	Rice	cytosol, plasma membrane, plastid	0.0	0.0
Os04t0460200-01	Rice	endoplasmic reticulum	0.0	0.0
Os04t0201800-00	Rice	plasma membrane, plastid	0.0	0.0
Os03t0817200-01	Rice	plasma membrane	0.0	0.0
Os02t0788800-01	Rice	cytosol, peroxisome, plasma membrane	0.0	0.0
Os02t0101000-01	Rice	cytosol, nucleus, plasma membrane	0.0	0.0
Os01t0597600-01	Rice	peroxisome, plasma membrane, vacuole	0.0	0.0
Os01t0597400-00	Rice	cytosol, peroxisome, plasma membrane	0.0	0.0
KRG89633	Soybean	plasma membrane	0.0	0.0

Protein Annotations

MapMan:24.2.3.4.7	EntrezGene:4336049	InterPro:AA_transpt_TM	EMBL:AK106202	ProteinID:BAF14903.1	ProteinID:BAS89542.1
ProteinID:CAD40982.2	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015171	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:Os04g0460300	EnsemblPlants:Os04t0460300-01
PFAM:PF01490	PANTHER:PTHR22950	PANTHER:PTHR22950:SF465	UniProt:Q7XUV8	TMHMM:TMhelix	UniParc:UPI000021C605
RefSeq:XP_015636922.1	SEG:seg	:	:	:	:

Description

amino acid transporter-like 13Amino acid transporter, transmembrane domain containing protein. (Os04t0460300-01)

Coordinates

chr4:+:22977821..22980329

Molecular Weight (calculated)

47997.6 Da

IEP (calculated)

8.305

GRAVY (calculated)

0.703

Length

455 amino acids

Sequence
(BLAST)

001: MAIGGAAPPH PPRGGGGGSP EDSSTARRPD FEQPLLQAHA AVPARGKQEP VERDHEAQCS PEADGDGATF VRTCFNGLNA LSGVGLLSIP YALSEGGWLS
101: LVLLLAVAMV CCYTGLLLRR CMAASPAVRG YPDIGALAFG AKGRLAVSAF LYAELYLVAI GFLILEGDNL DKLFPGTSLA VGGLVVSGKQ LFVVVVAVVI
201: LPTTWLRSLA VLAYVSASGV LASVVVVFCV LWAAVFDGVG FHGKGRMLNV SGLPTALGLY TFCYCGHAIF PTLCNSMQEK DKFSRVLVIC FVACTVNYGS
301: MAILGYLMYG DDVKSQVTLN LPEGKISSKL AIYTTLINPF SKYALMVTPV ATAIEEKLLA GNKRSVNVLI RTLIVVSTVV IALTVPFFGH LMALVGSLLS
401: VMASMLLPCI CYLKIFGLTR CGRGETLLIA AIIVLGSLVA ATGTYSSLKK IFYEF

Best Arabidopsis Sequence Match ( AT3G28960.1 )
(BLAST)

001: MEEDNQEIQR DNVGSSSFFK TCFNALNALS GIGILSVPYS LARGGWLSLS LLLLLAVTAF YTSLLITKCM NADRNIKTYP DIGERAFGRP GRIIVSVFMH
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV

Arabidopsis Description

AVT1IAmino acid transporter AVT1I [Source:UniProtKB/Swiss-Prot;Acc:F4J1Q9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.