Factsheet for Solyc03g013160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008751	Potato	plasma membrane	93.66	93.66
VIT_14s0108g00690.t01	Wine grape	plasma membrane	58.92	60.19
VIT_14s0108g00630.t01	Wine grape	plasma membrane	60.09	59.81
VIT_06s0061g00570.t01	Wine grape	plasma membrane	34.98	57.98
VIT_14s0108g00620.t01	Wine grape	plasma membrane	57.98	57.71
KRH40095	Soybean	plasma membrane	55.87	55.87
AT3G28960.2	Thale cress	plasma membrane	53.05	55.8
Bra025369.1-P	Field mustard	plasma membrane	52.82	55.56
CDX85233	Canola	plasma membrane	52.82	55.56
CDX86397	Canola	plasma membrane	52.82	55.56
Solyc03g013440.2.1	Tomato	plasma membrane	44.37	54.62
AT5G15240.1	Thale cress	plasma membrane	54.23	54.61
Bra033075.1-P	Field mustard	plasma membrane	51.64	54.32
CDY44419	Canola	plasma membrane	51.64	54.32
KRH40411	Soybean	plasma membrane	34.27	54.28
VIT_06s0009g01140.t01	Wine grape	plasma membrane	53.52	54.16
KRH30199	Soybean	extracellular, plasma membrane	47.42	54.16
KRH40094	Soybean	plasma membrane	53.99	53.86
KRH01177	Soybean	plasma membrane	54.23	53.85
CDX85556	Canola	plasma membrane	53.52	53.15
CDX91000	Canola	plasma membrane	53.52	53.02
Solyc05g053970.2.1	Tomato	plasma membrane	43.19	52.27
Solyc05g050440.2.1	Tomato	extracellular, plasma membrane, vacuole	20.89	52.05
Solyc06g061260.1.1	Tomato	plasma membrane	22.77	50.26
KRH30194	Soybean	plasma membrane	51.41	50.11
KRG98240	Soybean	plasma membrane	51.17	49.89
KRG98784	Soybean	plasma membrane	42.96	49.73
Solyc06g061270.1.1	Tomato	cytosol, plasma membrane	22.77	46.19
Solyc03g063030.2.1	Tomato	plasma membrane	21.83	39.57
CDY04048	Canola	plasma membrane	51.41	37.76
KRH75803	Soybean	mitochondrion	27.7	37.7
Solyc03g078150.2.1	Tomato	peroxisome	38.03	30.86
Solyc03g063040.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	8.69	30.08
Solyc10g084830.1.1	Tomato	cytosol, peroxisome, plasma membrane	37.09	29.87
Solyc09g098380.1.1	Tomato	plasma membrane	29.34	28.28
Solyc11g008440.1.1	Tomato	cytosol, nucleus, plasma membrane	36.15	27.75
Solyc02g082520.1.1	Tomato	cytosol, peroxisome, plasma membrane	22.07	22.43
Solyc03g032090.1.1	Tomato	plasma membrane	22.07	22.01
Solyc02g082510.1.1	Tomato	plasma membrane	21.6	21.65
Solyc10g048180.1.1	Tomato	plasma membrane	21.6	21.55
Solyc03g063050.1.1	Tomato	extracellular, plasma membrane	13.15	21.05

Protein Annotations

EnsemblPlants:Solyc03g013160.2.1	EnsemblPlantsGene:Solyc03g013160.2	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015171	GO:GO:0016020	GO:GO:0016021	InterPro:AA_transpt_TM
PANTHER:PTHR22950	PANTHER:PTHR22950:SF280	PFAM:PF01490	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002768519
UniProt:K4BEN7	MapMan:24.2.3.4.7	:	:	:	:

Description

No Description!

Coordinates

chr3:-:47050218..47052464

Molecular Weight (calculated)

47039.5 Da

IEP (calculated)

8.246

GRAVY (calculated)

0.624

Length

426 amino acids

Sequence
(BLAST)

001: MENRTENDNS LSLPMLADDF DKAEKGIGSG RLISNGKTSF LKTTFHGLNA LSGVGILSTP YALSSGGWLS MILLLQIACV TFYTSILIKK CMDFDPTITS
101: YPDIGDRAFG RRGRILVSVF MNLELYMVAT GFLILSGDNL HNLLPEVKFE FWGIQFGGKQ SFVVIVALVI LPTVLLKNMS ILAYVSASAV LATLVIIGAI
201: FWEAMYDGIG FHKSGVVVNW GGIPTSFSLY AFCYCAHPVF PTLYTSMKNQ NQFSKVMIVC FAFSTVTYAS IAIMGYLMFG SDLESQITLN LQPEKFSSKL
301: AIYTALINPI AKYALMMTPI INRIEERLHS YCDKKSFSYL NRTILMISSV TVALTIPFFG YLMSLVGAFL SVTTSILVPS LCYLKILGTH NKLGYEIVII
401: GFIILMGIIV LVTGTYTSMQ EIMHLM

Best Arabidopsis Sequence Match ( AT5G15240.1 )
(BLAST)

001: MSEDKDYMSE PFIVKKIDDE ESLLDDYNPQ GNTSFSKTCF HGINALSGVG ILSVPYALAS GGWLSLIILF TVAITTFYCA ILIKRCMEMD PLLRSYPDIG
101: YKAFGNTGRV IVSIFMNLEL YLVATSFLIL EGDNLNKLFS NVGLNFMGLE FQGKQMFIIM VALIILPSVW LDNMRILSYV SASGVFASGV ILASIFSVGA
201: FEGVGFKNND SEVFRLNGVA TSVSLYAFCY CAHPVFPTLY TSMKNKRQFS NVMIICFTIC TFIYASVAVL GYLMYGSDVE SQITLNLPTD KLSSKVAIWT
301: TLVNPIAKFA LMVTPIIDAM RSRFSRVLPN KRASGFLLST ILVTSNVIVA LLLPFFGDLM SLVGAFLSAS ASVILPCLCY LKISGKYQRL GFETLVLIGI
401: TLTGIVVVIT GTYQAVKDIF GRF

Arabidopsis Description

AVT1JAmino acid transporter AVT1J [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.