CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025369.1-P	Field mustard	plasma membrane	99.75	99.75
CDX86397	Canola	plasma membrane	99.75	99.75
CDY44419	Canola	plasma membrane	92.84	92.84
AT3G28960.2	Thale cress	plasma membrane	89.63	89.63
CDY04048	Canola	plasma membrane	92.59	64.66
VIT_14s0108g00690.t01	Wine grape	plasma membrane	60.99	59.23
VIT_14s0108g00630.t01	Wine grape	plasma membrane	60.49	57.24
PGSC0003DMT400076795	Potato	plasma membrane	47.41	57.14
VIT_14s0108g00620.t01	Wine grape	plasma membrane	59.01	55.84
KRH40411	Soybean	plasma membrane	37.04	55.76
VIT_06s0061g00570.t01	Wine grape	plasma membrane	35.31	55.64
KRH40095	Soybean	plasma membrane	57.78	54.93
VIT_06s0009g01140.t01	Wine grape	plasma membrane	56.3	54.16
PGSC0003DMT400076791	Potato	plasma membrane	55.8	53.81
KRH40094	Soybean	plasma membrane	56.54	53.63
KRH01177	Soybean	plasma membrane	56.3	53.15
KRH30199	Soybean	extracellular, plasma membrane	48.89	53.08
Solyc03g013160.2.1	Tomato	plasma membrane	55.56	52.82
PGSC0003DMT400008751	Potato	plasma membrane	55.56	52.82
CDX85556	Canola	plasma membrane	55.56	52.45
CDX91000	Canola	plasma membrane	55.56	52.33
Solyc03g013440.2.1	Tomato	plasma membrane	43.7	51.16
KRG98784	Soybean	plasma membrane	45.43	50.0
KRG98240	Soybean	plasma membrane	51.85	48.05
KRH30194	Soybean	plasma membrane	51.6	47.83
KRH75803	Soybean	mitochondrion	29.88	38.66
CDX80808	Canola	plasma membrane	20.0	32.02
CDY35425	Canola	plasma membrane	39.75	30.96
CDY22507	Canola	plasma membrane	39.51	30.77
CDY67831	Canola	cytosol, peroxisome, plasma membrane	40.25	30.58
CDY06942	Canola	cytosol, peroxisome, plasma membrane	40.25	30.52
CDY23868	Canola	cytosol, nucleus, plasma membrane	38.77	29.68
CDX79951	Canola	cytosol, nucleus, plasma membrane	38.52	29.49
CDY38090	Canola	plasma membrane	31.36	29.33
CDX73972	Canola	extracellular, plastid	9.14	28.24
CDY18351	Canola	plastid	35.06	27.9
CDY07919	Canola	cytosol, nucleus, plasma membrane	36.05	27.65
CDY55126	Canola	plasma membrane	34.32	27.04
CDY10463	Canola	plasma membrane	36.3	26.92
CDY40336	Canola	plasma membrane	36.05	26.69
CDY44630	Canola	plasma membrane	35.8	26.41
CDX73974	Canola	cytosol, nucleus, plasma membrane	26.42	26.16
CDX74865	Canola	plasma membrane	35.56	26.09
CDX78269	Canola	plasma membrane	34.07	26.04
CDX73443	Canola	cytosol, nucleus, plasma membrane	34.07	25.7
CDX93284	Canola	cytosol, nucleus, plasma membrane	34.57	25.64
CDY55127	Canola	cytosol, plasma membrane, plastid	35.56	24.66
CDX80809	Canola	plasma membrane	35.8	24.45
CDY70145	Canola	plasma membrane	23.7	23.82
CDY21456	Canola	plasma membrane	23.46	23.57
CDX85489	Canola	vacuole	24.44	22.92
CDY42861	Canola	peroxisome	22.96	21.73
CDY47026	Canola	peroxisome, plastid	22.96	21.58
CDY59097	Canola	plastid	23.46	21.44
CDY53922	Canola	plasma membrane	22.47	21.36
CDX73848	Canola	plasma membrane	22.47	21.36
CDY54797	Canola	plastid	23.46	21.35
CDY08487	Canola	plasma membrane	20.99	20.38
CDY01068	Canola	plasma membrane	20.99	20.29

Protein Annotations

EnsemblPlants:CDX85233	EnsemblPlantsGene:GSBRNA2T00142871001	GO:A0A078DD56	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF280
PFAM:PF01490	ProteinID:CDX85233	ProteinID:CDX85233.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEC580
MapMan:24.2.3.4.7	:	:	:	:	:

Description

BnaC07g25440D

Coordinates

chrLK031841:-:531100..533106

Molecular Weight (calculated)

44196.0 Da

IEP (calculated)

9.290

GRAVY (calculated)

0.617

Length

405 amino acids

Sequence
(BLAST)

001: MEEDNHEKQL DDGGSSSLFK TCFNALNALS GIGILSVPYS LARGGWLSLS LLLLLAATAF YTSLLITKCM NADRTIKTYP DIGERAFGRP GRIIVSVFMH
101: LELYLVTTGF LILEGDNLHN LFPGFNIKLM GVRLNGKQSF MASVALVIMP TLWWDSLSVL SYVSMSGVLA TAVTLGSISW VGAFDGIGFH QSGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLISFI LCTIGYTSMA VLGYLMYGSN TLSQITLNLP IHKTSSKVAI YTTLVNPIAK YALMITPTVN
301: TIKDWFPKKY AKKSYLHLSI STLFIASSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKISGNFK KLGFETVMLF GMVVMSVPIG VLGTYIAIRE
401: MVGSV

Best Arabidopsis Sequence Match ( AT3G28960.1 )
(BLAST)

001: MEEDNQEIQR DNVGSSSFFK TCFNALNALS GIGILSVPYS LARGGWLSLS LLLLLAVTAF YTSLLITKCM NADRNIKTYP DIGERAFGRP GRIIVSVFMH
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV

Arabidopsis Description

AVT1IAmino acid transporter AVT1I [Source:UniProtKB/Swiss-Prot;Acc:F4J1Q9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.