CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005712.1-P	Field mustard	plasma membrane	84.93	98.8
CDX80809	Canola	plasma membrane	93.66	92.24
CDY55126	Canola	plasma membrane	70.55	80.16
CDX80808	Canola	plasma membrane	30.31	69.96
CDY07919	Canola	cytosol, nucleus, plasma membrane	61.64	68.18
CDX73974	Canola	cytosol, nucleus, plasma membrane	47.6	67.97
CDX73972	Canola	extracellular, plastid	15.07	67.18
CDY40336	Canola	plasma membrane	59.42	63.44
CDY10463	Canola	plasma membrane	58.56	62.64
HORVU2Hr1G075350.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	16.61	56.4
HORVU4Hr1G022660.1	Barley	extracellular	20.03	52.94
Solyc10g084830.1.1	Tomato	cytosol, peroxisome, plasma membrane	44.18	48.77
PGSC0003DMT400028760	Potato	cytosol, peroxisome, plasma membrane	43.66	48.2
CDY18351	Canola	plastid	40.75	46.76
CDX78269	Canola	plasma membrane	41.44	45.66
CDY44630	Canola	plasma membrane	42.81	45.54
CDX73443	Canola	cytosol, nucleus, plasma membrane	41.78	45.44
CDX74865	Canola	plasma membrane	42.64	45.11
CDX93284	Canola	cytosol, nucleus, plasma membrane	41.61	44.51
GSMUA_Achr6P34060_001	Banana	plasma membrane	41.44	43.84
EES17245	Sorghum	cytosol, peroxisome, plasma membrane	40.07	40.62
Zm00001d032325_P001	Maize	mitochondrion, plasma membrane, vacuole	18.49	40.0
CDY22507	Canola	plasma membrane	35.27	39.62
CDY35425	Canola	plasma membrane	35.1	39.42
HORVU5Hr1G020560.3	Barley	plasma membrane	39.21	38.68
TraesCS5B01G084900.1	Wheat	plasma membrane	39.38	38.4
TraesCS5D01G091100.1	Wheat	plasma membrane	39.04	38.26
CDY23868	Canola	cytosol, nucleus, plasma membrane	34.59	38.19
CDX79951	Canola	cytosol, nucleus, plasma membrane	34.59	38.19
Os12t0574000-01	Rice	plasma membrane	38.7	38.05
TraesCS5A01G081500.1	Wheat	plasma membrane	38.87	38.02
CDY06942	Canola	cytosol, peroxisome, plasma membrane	34.59	37.83
CDY67831	Canola	cytosol, peroxisome, plasma membrane	34.42	37.71
Zm00001d031629_P001	Maize	cytosol, plasma membrane, vacuole	11.47	37.22
Zm00001d041534_P002	Maize	plasma membrane	38.7	37.11
Zm00001d030751_P001	Maize	plasma membrane	40.07	37.03
CDY44419	Canola	plasma membrane	24.83	35.8
CDX91000	Canola	plasma membrane	26.2	35.58
CDX86397	Canola	plasma membrane	24.66	35.56
CDX85233	Canola	plasma membrane	24.66	35.56
CDX85556	Canola	plasma membrane	26.03	35.43
CDY38090	Canola	plasma membrane	25.0	33.72
CDX85489	Canola	vacuole	19.86	26.85
CDY04048	Canola	plasma membrane	25.51	25.69
CDY21456	Canola	plasma membrane	17.47	25.31
CDY70145	Canola	plasma membrane	17.29	25.06
CDY42861	Canola	peroxisome	18.15	24.77
CDY47026	Canola	peroxisome, plastid	17.98	24.36
CDY53922	Canola	plasma membrane	17.64	24.18
CDX73848	Canola	plasma membrane	17.64	24.18
CDY01068	Canola	plasma membrane	17.29	24.11
CDY08487	Canola	plasma membrane	17.12	23.98
CDY59097	Canola	plastid	17.98	23.7
CDY54797	Canola	plastid	17.81	23.37

Protein Annotations

EnsemblPlants:CDY55127	EnsemblPlantsGene:GSBRNA2T00016424001	GO:A0A078IXW7	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF313	PFAM:PF01490	ProteinID:CDY55127	ProteinID:CDY55127.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDF45E	UniProt:A0A078IXW7	MapMan:24.2.3.4.7	:

Description

BnaA03g55040DBnaA03g55040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXW7]

Coordinates

chrLK033376:+:51284..54148

Molecular Weight (calculated)

64344.0 Da

IEP (calculated)

8.226

GRAVY (calculated)

0.390

Length

584 amino acids

Sequence
(BLAST)

001: MSRWCSKATC ATFSFLEEDL HLLGGSAYNI DKEKHILRYS YKPIRHSFLL RLFVGFRYKK KMKQEEQERE DLYHTDDDED EESQAHSSVP STPLSRNDSN
101: TDAVPWPRSY RQSMDLLTGV TPPISTNLVS SFRKRRQSSA FGSFASSSSK QSLLIDKDET QNSIVTSIKS FTDSHLKLSV PDDLSIPQEN RKCTISQSVI
201: NGVNVLCGGA LLTMPYALKE GGWLGLLILF SFGIITLYTG ILLKRCLENS PGIHTYPDIG QAAFGTTGRI LLSIFLYMDL YATCVEYIIM MSDNMSGMFP
301: NTSLYIAGIS LNSNQVFAVT TTLIVLPTVW LRDLSLLSYI SAGGVFSSIL LALCLFWVGS VGGVGFQLQG QVLDLTNLPV AIGIYGFGFG GHAVLPNIYS
401: SMKEPSKFPL VLLMSFGFCT LFYIAISVCG YTMFGEAIQS QFTLNMPQYF TSSKIAVWTA VITPMTKYPL TLTPVLLSLE ELLPSSSRKM RSKGVSMIIR
501: TILVLSTLVV ALTVPFFATV AALIGSFVAM LIAVIFPCLC YLKIMKGRLT NFHMAICVLI IIVGVVSGVC GTYSAIVRLI GEMT

Best Arabidopsis Sequence Match ( AT5G02170.1 )
(BLAST)

001: MKQNETFDQE REDLYHTFDE EDEESQTESS VPSTPLSRNR SEDVPVPWPR SYRQSMDLLT GVTPPTSTSF VSSFRQRRQS SVFGSFTSSP SKQQLLIDKD
101: EIQSSVVSSI KSFLASHLQL SVPGDLLTPQ ENRSCTFSQS VLNGINVLCG VALLTMPYAV KEGGWLGLFI LFSFGIITFY TGILLKRCLE NSPGIHTYPD
201: IGQAAFGTTG RILVSILLYV ELYASCVEYI IMMSDNLSRM FPNTSLYING FSLDSTQVFA ITTTLIVLPT VWLKDLSLLS YLSAGGVISS ILLALCLFWA
301: GSVDGVGFHI SGQALDITNI PVAIGIYGFG FGSHSVFPNI YSSMKEPSKF PTVLLISFAF CTLFYIAVAV CGFTMFGDAI QSQFTLNMPP HFTSSKIAVW
401: TAVVTPMTKY ALTITPVMLS LEELIPSSSR KMRSKGVSML FRTILVLSTL VVALTVPFFA TVAALIGSFI AMLIALIFPC LCYISIMKGR LTNFQIGICI
501: LIVIIGIVSG CCGTYSAIAR LIGEMT

Arabidopsis Description

AVT1EAmino acid transporter AVT1E [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.