CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07919	Canola	cytosol, nucleus, plasma membrane	97.07	75.19
CDY55126	Canola	plasma membrane	65.28	51.95
CDY40336	Canola	plasma membrane	65.28	48.81
CDY10463	Canola	plasma membrane	64.79	48.53
CDY55127	Canola	cytosol, plasma membrane, plastid	67.97	47.6
CDX80809	Canola	plasma membrane	67.97	46.88
CDX80808	Canola	plasma membrane	25.92	41.9
KRH27948	Soybean	plasma membrane	16.63	39.31
CDY18351	Canola	plastid	46.21	37.13
CDY44630	Canola	plasma membrane	49.39	36.79
CDX78269	Canola	plasma membrane	47.43	36.6
CDX74865	Canola	plasma membrane	49.14	36.41
CDX73443	Canola	cytosol, nucleus, plasma membrane	47.43	36.13
CDX93284	Canola	cytosol, nucleus, plasma membrane	47.68	35.71
CDY23868	Canola	cytosol, nucleus, plasma membrane	41.56	32.14
CDX79951	Canola	cytosol, nucleus, plasma membrane	41.56	32.14
CDY22507	Canola	plasma membrane	40.83	32.12
CDY35425	Canola	plasma membrane	40.59	31.92
CDY06942	Canola	cytosol, peroxisome, plasma membrane	40.59	31.09
CDY67831	Canola	cytosol, peroxisome, plasma membrane	40.34	30.96
CDX91000	Canola	plasma membrane	29.58	28.14
CDX85556	Canola	plasma membrane	29.1	27.74
CDX85233	Canola	plasma membrane	26.16	26.42
CDX86397	Canola	plasma membrane	25.92	26.17
CDY44419	Canola	plasma membrane	25.92	26.17
CDY38090	Canola	plasma membrane	25.92	24.48
CDX85489	Canola	vacuole	22.0	20.83
CDY04048	Canola	plasma membrane	25.43	17.93
CDY21456	Canola	plasma membrane	16.63	16.87
CDY70145	Canola	plasma membrane	16.38	16.63
CDY42861	Canola	peroxisome	17.36	16.59
CDY59097	Canola	plastid	17.85	16.48
CDY54797	Canola	plastid	17.85	16.4
CDY47026	Canola	peroxisome, plastid	17.11	16.24
CDY53922	Canola	plasma membrane	16.38	15.73
CDX73848	Canola	plasma membrane	16.38	15.73
CDY01068	Canola	plasma membrane	15.65	15.27
CDY08487	Canola	plasma membrane	15.4	15.11
CDX73972	Canola	extracellular, plastid	1.71	5.34

Protein Annotations

EnsemblPlants:CDX73974	EnsemblPlantsGene:GSBRNA2T00111706001	GO:A0A078CCP0	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF313
PFAM:PF01490	ProteinID:CDX73974	ProteinID:CDX73974.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEA123
MapMan:24.2.3.4.7	:	:	:	:	:

Description

BnaA03g30730D

Coordinates

chrLK031800:-:763217..766289

Molecular Weight (calculated)

44775.9 Da

IEP (calculated)

4.750

GRAVY (calculated)

0.380

Length

409 amino acids

Sequence
(BLAST)

001: MKLEEQESDI LFHADDEESQ VDVSCYDEDE ISRKSSQLSM NDSAPWPRSY RQSVDILTGV TPPTTSFIHR RGSQASSFTS SIASLYRRRP NSILNSFASS
101: TSKQPLLADK DDVSVKSYVS SQLKLSITDL SYEEQNLCSF PQSVLNGINI LCGVSLLTMP YAVKEGGWLG LIILFFFGII TCYTGILLKR CLESSPDIHT
201: YPDIGQAAFG FTGRLIISIL LYMELYACCV EYIIMMSDNL SRFFPHVSLN VAGVSIDSSQ IFAIATALIV LPTVWLRDLS LLSYLSAGGV FSSILLALCL
301: FWVGSVDGVG FHSGGQALDL SNLPVAIGIF GFGFSGHAVF PNIYSSMKDP SKFPLVLIIS FGFCVVFYIA VAVCGYSMFG EAIQSQFTLS MPQQFTSSKI
401: AVWTAVSNT

Best Arabidopsis Sequence Match ( AT3G09330.1 )
(BLAST)

001: MELEEQERDI LFPTDDEECQ VDVSCDDEDD DSSSYSSLSQ NDSAPWPRSY RQSVDILTGV TPPTISFIHR RSSQTSFTSS VASLYKRRPT SIANSFASST
101: SKQPLLSEKD DVLFLSSQIG LSNTDLSYGE PNFCSFPQSV LNGINVLCGI SLLTMPYAVK EGGWLGLCIL LSFAIITCYT GILLKRCLES SSDLRTYPDI
201: GQAAFGFTGR LIISILLYME LYVCCVEYII MMSDNLSRVF PNITLNIVGV SLDSPQIFAI SATLIVLPTV WLKDLSLLSY LSAGGVFVSI LLALCLFWVG
301: SVDGVGFHTG GKSLDLANLP VAIGIFGFGF SGHAVLPSIY SSMKEPSKFP LVLLISFGFC VFFYIVVAIC GYSMFGEAIQ SQFTLNMPQQ YTASKIAVWT
401: AVVVPMTKYA LALTPIVLGL EELMLPSEKM RSYGVSIFIK TILVLSTLVV ALTFPFFAIM GALMGSFLAM LVDFIFPCLC YLSILKGRLS KTQIGICVFI
501: IISGIVSGCC GTYSAIGRLV GKLD

Arabidopsis Description

AVT1GAmino acid transporter AVT1G [Source:UniProtKB/Swiss-Prot;Acc:Q1PER9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.