Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78269 | Canola | plasma membrane | 95.72 | 96.98 |
| AT3G54830.1 | Thale cress | nucleus | 77.47 | 76.19 |
| CDY18351 | Canola | plastid | 70.58 | 74.46 |
| CDX93284 | Canola | cytosol, nucleus, plasma membrane | 74.49 | 73.26 |
| CDY44630 | Canola | plasma membrane | 74.67 | 73.04 |
| CDX74865 | Canola | plasma membrane | 73.93 | 71.92 |
| Solyc03g063030.2.1 | Tomato | plasma membrane | 31.47 | 71.91 |
| VIT_13s0019g04660.t01 | Wine grape | cytosol, nucleus, plasma membrane | 69.83 | 66.61 |
| KRG91942 | Soybean | plasma membrane | 67.04 | 66.18 |
| KRG99573 | Soybean | cytosol, nucleus, plasma membrane | 13.04 | 65.42 |
| KRH34828 | Soybean | plasma membrane | 66.29 | 63.46 |
| PGSC0003DMT400036273 | Potato | cytosol, nucleus, plasma membrane | 51.77 | 62.61 |
| Solyc11g008440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 64.62 | 62.52 |
| GSMUA_Achr5P10650_001 | Banana | cytosol, nucleus, plasma membrane | 61.45 | 59.57 |
| GSMUA_Achr1P03170_001 | Banana | cytosol, nucleus, plasma membrane | 62.2 | 59.33 |
| Solyc03g063040.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 13.41 | 58.54 |
| Zm00001d044994_P001 | Maize | cytosol, plasma membrane, vacuole | 16.2 | 56.86 |
| PGSC0003DMT400019190 | Potato | cytosol, nucleus, plasma membrane | 63.31 | 56.48 |
| Zm00001d043640_P001 | Maize | plasma membrane | 17.32 | 55.03 |
| TraesCS2A01G052500.1 | Wheat | plasma membrane | 56.24 | 54.51 |
| TraesCS2B01G065200.1 | Wheat | cytosol, peroxisome, plasma membrane | 56.42 | 54.4 |
| Os04t0201800-00 | Rice | plasma membrane, plastid | 40.6 | 54.23 |
| TraesCSU01G023100.1 | Wheat | cytosol, peroxisome, plasma membrane | 56.24 | 54.22 |
| HORVU2Hr1G008090.4 | Barley | cytosol, peroxisome, plasma membrane | 56.24 | 53.74 |
| Zm00001d004340_P002 | Maize | plasma membrane | 56.98 | 53.68 |
| Os02t0101000-01 | Rice | cytosol, nucleus, plasma membrane | 56.42 | 53.06 |
| EES06091 | Sorghum | plasma membrane | 55.68 | 51.91 |
| Zm00001d048577_P001 | Maize | cytosol, nucleus, plasma membrane | 54.75 | 51.85 |
| TraesCS6B01G007400.1 | Wheat | cytosol, peroxisome, plasma membrane | 53.82 | 51.33 |
| TraesCS6A01G002400.1 | Wheat | cytosol, nucleus, plasma membrane | 54.0 | 51.24 |
| TraesCS6D01G003200.1 | Wheat | cytosol, nucleus, plasma membrane | 53.82 | 50.7 |
| EER89806 | Sorghum | cytosol, nucleus, plasma membrane | 53.07 | 49.91 |
| KRH38592 | Soybean | endoplasmic reticulum | 22.16 | 49.79 |
| Solyc03g063050.1.1 | Tomato | extracellular, plasma membrane | 24.21 | 48.87 |
| HORVU6Hr1G001480.1 | Barley | plasma membrane | 53.63 | 48.48 |
| CDX73974 | Canola | cytosol, nucleus, plasma membrane | 36.13 | 47.43 |
| CDY55126 | Canola | plasma membrane | 44.69 | 46.69 |
| KXG25873 | Sorghum | plasma membrane | 57.17 | 46.66 |
| CDY40336 | Canola | plasma membrane | 47.11 | 46.25 |
| CDY07919 | Canola | cytosol, nucleus, plasma membrane | 45.44 | 46.21 |
| Zm00001d037057_P001 | Maize | cytosol, nucleus, plasma membrane | 45.07 | 46.01 |
| CDY10463 | Canola | plasma membrane | 46.74 | 45.97 |
| CDY22507 | Canola | plasma membrane | 41.34 | 42.69 |
| CDY35425 | Canola | plasma membrane | 41.34 | 42.69 |
| CDY23868 | Canola | cytosol, nucleus, plasma membrane | 41.53 | 42.16 |
| CDX79951 | Canola | cytosol, nucleus, plasma membrane | 41.34 | 41.97 |
| CDY06942 | Canola | cytosol, peroxisome, plasma membrane | 41.71 | 41.95 |
| CDY55127 | Canola | cytosol, plasma membrane, plastid | 45.44 | 41.78 |
| CDY67831 | Canola | cytosol, peroxisome, plasma membrane | 41.34 | 41.65 |
| CDX73972 | Canola | extracellular, plastid | 10.06 | 41.22 |
| CDX80808 | Canola | plasma membrane | 19.37 | 41.11 |
| CDX80809 | Canola | plasma membrane | 45.25 | 40.98 |
| CDX85556 | Canola | plasma membrane | 30.91 | 38.69 |
| CDX91000 | Canola | plasma membrane | 30.91 | 38.6 |
| CDX85233 | Canola | plasma membrane | 25.7 | 34.07 |
| CDX86397 | Canola | plasma membrane | 25.7 | 34.07 |
| CDY44419 | Canola | plasma membrane | 25.51 | 33.83 |
| CDY38090 | Canola | plasma membrane | 25.33 | 31.41 |
| CDX85489 | Canola | vacuole | 20.86 | 25.93 |
| CDY70145 | Canola | plasma membrane | 19.37 | 25.81 |
| CDY21456 | Canola | plasma membrane | 19.18 | 25.56 |
| CDY08487 | Canola | plasma membrane | 18.99 | 24.46 |
| CDY01068 | Canola | plasma membrane | 18.99 | 24.34 |
| CDY59097 | Canola | plastid | 19.74 | 23.93 |
| CDY47026 | Canola | peroxisome, plastid | 19.18 | 23.9 |
| CDY42861 | Canola | peroxisome | 18.99 | 23.83 |
| CDY54797 | Canola | plastid | 19.74 | 23.82 |
| CDY04048 | Canola | plasma membrane | 25.7 | 23.79 |
| CDY53922 | Canola | plasma membrane | 18.81 | 23.71 |
| CDX73848 | Canola | plasma membrane | 18.81 | 23.71 |
Protein Annotations
| EnsemblPlants:CDX73443 | EnsemblPlantsGene:GSBRNA2T00108944001 | GO:A0A078CET3 | InterPro:AA_transpt_TM | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF240 |
| PFAM:PF01490 | ProteinID:CDX73443 | ProteinID:CDX73443.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE583B |
| MapMan:24.2.3.4.7 | : | : | : | : | : |
Description
BnaC08g25600D
Coordinates
chrLK031799:+:391290..395002
Molecular Weight (calculated)
58190.6 Da
IEP (calculated)
6.182
GRAVY (calculated)
0.402
Length
537 amino acids
Sequence
(BLAST)
(BLAST)
001: MNHSSSDQSL YLESDGEDER KNLAEEEDDG AFSDYSDVHN QNQNHSKPNS YSTAWPKSYR QSIDLYGSLP SPSPGFLGNS SLSRFESSFS SLTRRHTPES
101: LPAVRKPLLV DEEAAKRKRS SHSLLPSKAS SRVSHEMGIS NDSSFGQAVL NGVNVLCGVG ILSTPYAVKE GGWLGLLILF AFGVLCFYTG LLLRYCLDSH
201: PDLQTYPDIG HAAFGTTGRI LVSVILYLEL YAMSVEYIIL ESDNLSSLFP NAALSIGGFH LDAPHLFALL TTIAVLPTVW LRDLSILSYI SAGGVIASVL
301: VVLCLFWVGL IDEVGIHSKG TPLNLATLPV SVGLYGYCYS GHGVFPNIYT SMAKPSQFPA VLVTCFGICT LMYAGVAVMG YSMFGESTES QFTLNLPQDL
401: VASKIALWTT VVSPFTKYPF LMIFSETLSL FLLEELLPSN HGKSRFYAIA IRSALAFSTL LVGLAIPFFG LVMSLIGSFL TMLITLILPP ACFLSILRTK
501: VTPTQVALCV VIITVGAVCS AMGTYSALSK IIEKLNT
101: LPAVRKPLLV DEEAAKRKRS SHSLLPSKAS SRVSHEMGIS NDSSFGQAVL NGVNVLCGVG ILSTPYAVKE GGWLGLLILF AFGVLCFYTG LLLRYCLDSH
201: PDLQTYPDIG HAAFGTTGRI LVSVILYLEL YAMSVEYIIL ESDNLSSLFP NAALSIGGFH LDAPHLFALL TTIAVLPTVW LRDLSILSYI SAGGVIASVL
301: VVLCLFWVGL IDEVGIHSKG TPLNLATLPV SVGLYGYCYS GHGVFPNIYT SMAKPSQFPA VLVTCFGICT LMYAGVAVMG YSMFGESTES QFTLNLPQDL
401: VASKIALWTT VVSPFTKYPF LMIFSETLSL FLLEELLPSN HGKSRFYAIA IRSALAFSTL LVGLAIPFFG LVMSLIGSFL TMLITLILPP ACFLSILRTK
501: VTPTQVALCV VIITVGAVCS AMGTYSALSK IIEKLNT
001: MNHSTSDQSL YIESDDGDDE RKHLSDDEDD DGTLSDTSDA YNQNQHHLSK ASPYSTAWPK SYRQSIDMFG SVPSPNLGFL ANSSMSRRGS SFMSSTLTRR
101: HTPESLPCVT KPLLEDEEAP KHKLSTHSLL PSKPSSSMVV SHDMGISNDS SFGQAVLNGV NVLCGVGILS TPYAVKEGGW LGLIILFAFG ILCFYTGLLL
201: RYCLDSHPDV QTYPDIGHAA FGSTGRILVS VILYMELYAM SVEYIILEGD NLSSMFPNAS LSIGGFHLDA PRLFALLTTL AVLPTVWLRD LSVLSYISAG
301: GVIASVLVVL CLFWVGLVDD VGIHSKGTPL NLATLPVSVG LYGYCYSGHG VFPNIYTSMA KPSQFSAVLL ASFGICTLMY AGVAVMGYSM FGESTESQFT
401: LNLPQDLVAS KIALWTTVVN PFTKYPLSRN IQRLFIYLFA MSLEELIPSN YGKSRFYAIA IRSALAISTL LVGLAIPFFG LVMSLIGSFL TMLIFLDTDA
501: DTTASLFLEH LKEKSNPYSG DNLYLNYDSR SSMFSHWHIF SPCKDH
101: HTPESLPCVT KPLLEDEEAP KHKLSTHSLL PSKPSSSMVV SHDMGISNDS SFGQAVLNGV NVLCGVGILS TPYAVKEGGW LGLIILFAFG ILCFYTGLLL
201: RYCLDSHPDV QTYPDIGHAA FGSTGRILVS VILYMELYAM SVEYIILEGD NLSSMFPNAS LSIGGFHLDA PRLFALLTTL AVLPTVWLRD LSVLSYISAG
301: GVIASVLVVL CLFWVGLVDD VGIHSKGTPL NLATLPVSVG LYGYCYSGHG VFPNIYTSMA KPSQFSAVLL ASFGICTLMY AGVAVMGYSM FGESTESQFT
401: LNLPQDLVAS KIALWTTVVN PFTKYPLSRN IQRLFIYLFA MSLEELIPSN YGKSRFYAIA IRSALAISTL LVGLAIPFFG LVMSLIGSFL TMLIFLDTDA
501: DTTASLFLEH LKEKSNPYSG DNLYLNYDSR SSMFSHWHIF SPCKDH
Arabidopsis Description
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.