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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • plasma membrane 2
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G052500.1 Wheat plasma membrane 94.31 95.67
TraesCSU01G023100.1 Wheat cytosol, peroxisome, plasma membrane 94.66 95.51
TraesCS2B01G065200.1 Wheat cytosol, peroxisome, plasma membrane 94.48 95.33
Zm00001d004340_P002 Maize plasma membrane 80.96 79.82
Os04t0201800-00 Rice plasma membrane, plastid 54.63 76.37
KXG25873 Sorghum plasma membrane 81.14 69.3
Solyc03g063030.2.1 Tomato plasma membrane 28.29 67.66
HORVU6Hr1G001480.1 Barley plasma membrane 70.28 66.5
Bra007103.1-P Field mustard plasma membrane 44.66 63.71
GSMUA_Achr1P03170_001 Banana cytosol, nucleus, plasma membrane 59.96 59.86
VIT_13s0019g04660.t01 Wine grape cytosol, nucleus, plasma membrane 59.25 59.15
CDY18351 Canola plastid 53.02 58.55
Solyc11g008440.1.1 Tomato cytosol, nucleus, plasma membrane 57.3 58.02
CDY44630 Canola plasma membrane 56.41 57.74
PGSC0003DMT400036273 Potato cytosol, nucleus, plasma membrane 45.55 57.66
GSMUA_Achr5P10650_001 Banana cytosol, nucleus, plasma membrane 56.58 57.4
CDX78269 Canola plasma membrane 53.91 57.17
CDX74865 Canola plasma membrane 55.87 56.88
Bra005061.1-P Field mustard cytosol, nucleus, plasma membrane 46.62 56.83
AT2G39130.2 Thale cress cytosol, nucleus, plasma membrane 55.52 56.73
Bra017088.1-P Field mustard cytosol, nucleus, plasma membrane 54.8 56.41
CDX73443 Canola cytosol, nucleus, plasma membrane 53.74 56.24
CDX93284 Canola cytosol, nucleus, plasma membrane 54.63 56.23
HORVU2Hr1G075350.2 Barley endoplasmic reticulum, plasma membrane, vacuole 16.9 55.23
Solyc03g063040.2.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 11.74 53.66
HORVU4Hr1G022660.1 Barley extracellular 20.64 52.49
PGSC0003DMT400019190 Potato cytosol, nucleus, plasma membrane 55.69 51.99
AT3G54830.1 Thale cress nucleus 48.22 49.63
HORVU2Hr1G080390.1 Barley plasma membrane 33.27 44.0
HORVU2Hr1G080420.1 Barley plasma membrane 33.27 44.0
HORVU7Hr1G038300.27 Barley plasma membrane 30.61 43.0
Solyc03g063050.1.1 Tomato extracellular, plasma membrane 20.28 42.86
HORVU5Hr1G020560.3 Barley plasma membrane 44.84 42.57
HORVU2Hr1G080350.5 Barley mitochondrion, plasma membrane, vacuole 32.92 41.95
HORVU2Hr1G080430.3 Barley cytosol 31.32 40.0
HORVU2Hr1G069080.4 Barley cytosol, peroxisome, plasma membrane 28.47 39.31
HORVU6Hr1G083720.2 Barley plastid 39.32 37.97
HORVU4Hr1G012350.1 Barley endoplasmic reticulum, plasma membrane 26.69 37.5
KRG99991 Soybean cytosol, nucleus, peroxisome 16.73 32.98
HORVU5Hr1G053550.1 Barley plasma membrane 18.86 25.18
HORVU6Hr1G064740.1 Barley plasma membrane 18.51 24.7
HORVU5Hr1G112210.1 Barley plasma membrane 18.15 24.0
HORVU2Hr1G068460.1 Barley endoplasmic reticulum, plasma membrane, vacuole 6.41 22.93
HORVU2Hr1G068450.4 Barley mitochondrion 15.12 20.09
HORVU5Hr1G112960.2 Barley cytosol 11.92 19.14
Protein Annotations
EnsemblPlants:HORVU2Hr1G008090.4EnsemblPlantsGene:HORVU2Hr1G008090InterPro:AA_transpt_TMPANTHER:PTHR22950PANTHER:PTHR22950:SF240PFAM:PF01490
SEG:segTMHMM:TMhelixUniParc:UPI000294F690MapMan:24.2.3.4.7::
Description
No Description!
Coordinates
chrchr2H:-:16801147..16807809
Molecular Weight (calculated)
60478.5 Da
IEP (calculated)
5.803
GRAVY (calculated)
0.364
Length
562 amino acids
Sequence
(BLAST)
001: MRNSVSDQSF VMESDDEEHQ LGGSEEEEEE ESDGSSSCGS PRVAEPAGGG HPGSYASHQW PQSYRQSMDI YSSVQSPSLS GFLGTPTLSR LSSSFLAASF
101: RGKPPPEIVK PLLPTAVPAA DSDDDRVDDA RKSSHQYLPP VRKASSLFKI PEDKKPLVVG GGGGHEVGPY RQCSYTQGVM NGVNVLCGVG ILSTPYAVRQ
201: GGWLGLVILA VLAVLAWYTG VLLRRCLDSK EGLETYPDIG HAAFGTPGRI VISIILYMEL YACCVEYLIL ESDNLSKLFP DAHLTVGGFN LDAHVLFAIL
301: TTLVVMPTTW LRDLSCLSFI SAGGVVASIV IVACLFWAGL VDHVGVNKSE GTALNLPGIP IAIGLYGYCY SGHGVFPNIY SSLKKSNQFN AVLFTCIALS
401: TVLFAGAAVM GYIMFGETTE SQFTLNMPPN LMSSKIAVWT TVTNPITKYA LTMTPLALSL EELLPPNRQT YRNIIMLRSA LVLSSLVVAL SVPFFGLVMS
501: LVGSLLTMFV AYILPCACFL AILRSKVTWY QIVLCVFIIV VGLCCAGVGT YSSLSKIIQN YQ
Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)
001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN
Arabidopsis Description
AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.