CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 3
peroxisome 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004340_P002	Maize	plasma membrane	82.67	95.44
TraesCSU01G023100.1	Wheat	cytosol, peroxisome, plasma membrane	69.76	82.41
TraesCS2A01G052500.1	Wheat	plasma membrane	69.0	81.95
TraesCS2B01G065200.1	Wheat	cytosol, peroxisome, plasma membrane	68.84	81.33
HORVU2Hr1G008090.4	Barley	cytosol, peroxisome, plasma membrane	69.3	81.14
Os04t0201800-00	Rice	plasma membrane, plastid	48.02	78.61
EES06091	Sorghum	plasma membrane	63.98	73.09
EER89806	Sorghum	cytosol, nucleus, plasma membrane	61.85	71.28
Solyc03g063030.2.1	Tomato	plasma membrane	23.56	65.96
Bra007103.1-P	Field mustard	plasma membrane	38.91	64.97
GSMUA_Achr1P03170_001	Banana	cytosol, nucleus, plasma membrane	52.43	61.28
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	51.52	60.21
Solyc11g008440.1.1	Tomato	cytosol, nucleus, plasma membrane	50.3	59.64
GSMUA_Achr5P10650_001	Banana	cytosol, nucleus, plasma membrane	50.0	59.39
CDY18351	Canola	plastid	45.74	59.14
CDY44630	Canola	plasma membrane	48.94	58.65
Bra005061.1-P	Field mustard	cytosol, nucleus, plasma membrane	40.88	58.35
CDX78269	Canola	plasma membrane	46.81	58.11
CDX74865	Canola	plasma membrane	48.33	57.61
PGSC0003DMT400036273	Potato	cytosol, nucleus, plasma membrane	38.75	57.43
AT2G39130.2	Thale cress	cytosol, nucleus, plasma membrane	47.87	57.27
CDX73443	Canola	cytosol, nucleus, plasma membrane	46.66	57.17
Bra017088.1-P	Field mustard	cytosol, nucleus, plasma membrane	47.11	56.78
CDX93284	Canola	cytosol, nucleus, plasma membrane	46.96	56.59
PGSC0003DMT400019190	Potato	cytosol, nucleus, plasma membrane	48.48	52.99
AT3G54830.1	Thale cress	nucleus	43.16	52.01
Solyc03g063040.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	9.57	51.22
EES17245	Sorghum	cytosol, peroxisome, plasma membrane	39.67	45.31
KXG19641	Sorghum	plasma membrane	26.44	43.61
Solyc03g063050.1.1	Tomato	extracellular, plasma membrane	17.33	42.86
EES07655	Sorghum	plasma membrane	34.65	41.38
EES07657	Sorghum	plasma membrane	32.52	41.0
EES10943	Sorghum	cytosol, peroxisome, plasma membrane	28.42	40.48
OQU87120	Sorghum	peroxisome, plasma membrane, vacuole	25.53	37.92
EES01014	Sorghum	plasma membrane	24.47	37.1
KRG99991	Soybean	cytosol, nucleus, peroxisome	15.2	35.09
EER98235	Sorghum	plastid	16.41	25.12
EER93207	Sorghum	plasma membrane	15.5	23.94
EES07473	Sorghum	plasma membrane	15.35	23.71
OQU82139	Sorghum	peroxisome	14.74	22.61
EES12671	Sorghum	plastid	16.11	21.37

Protein Annotations

EnsemblPlants:KXG25873	EnsemblPlantsGene:SORBI_3006G024600	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:AA_transpt_TM
PANTHER:PTHR22950	PANTHER:PTHR22950:SF240	PFAM:PF01490	ProteinID:KXG25873	ProteinID:KXG25873.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI00081AE139	UniProt:A0A1B6PJM3	MapMan:24.2.3.4.7	:	:

Description

hypothetical protein

Coordinates

chr6:+:4247749..4255600

Molecular Weight (calculated)

71991.4 Da

IEP (calculated)

7.920

GRAVY (calculated)

0.149

Length

658 amino acids

Sequence
(BLAST)

001: MIDRHGGTKI PKYPRLFRLP RRHHHHRRYP KPRPRRHYIS PSLSLRLLLL LTILNPRAGS LLLSRSSSPL AESERRDRGG AGEMKNSVTE RSFLMESDEE
101: EDDAAAVEDG KRRGHGHGGG DESGDDDDDG SDSSSPCDSP RVVAARCSQP SSYTQQWPQS YRQSIDMYSS VHSPNLSFLG TPSLSRLSNS FLTNSFRGKP
201: PEIISSLIKP LLPTSIASAS DDQQHQQHED VWKSSHYLPP SRKASSLQRI PEDQRPMVGG HEVGPYRQCS YTQGVMNGVN VLCGVGILST PYAVKQGGWL
301: GLVILAVLGA LAWYTGILLR RCLDSKDGLE TYPDIGHAAF GTAGRIIISI ILYMELYACC VEYLILESDN LSKLFPDAHL TIGGLTLDSH VLFAILTALI
401: VMPTTWLRDL SCLSFISAGG VIASIVIVSC LFWVGLVDHV GTVKVEGTAL NLPGIPIAIG LYGYCYSGHG VFPNIYSSLK KRNQFSAVLF TCIALSTVLF
501: AGAAIMGYIM FGESTESQFT LNLPPDLVAS KIAVWTTVTN PITKYALTMT PLALSLEELL PPNQQTYPNI MMLRSALVVS SLIIALSVPF FGLVMSLVGS
601: FLTMFVAYIL PCACFLSILR SKVTWYQVVL CVFIIAVGLC CAGVGTYSSL SKIIQQYH

Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN

Arabidopsis Description

AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.