Factsheet for TraesCSU01G023100.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G052500.1	Wheat	plasma membrane	96.59	97.11
TraesCS2B01G065200.1	Wheat	cytosol, peroxisome, plasma membrane	96.59	96.59
HORVU2Hr1G008090.4	Barley	cytosol, peroxisome, plasma membrane	95.51	94.66
Zm00001d004340_P002	Maize	plasma membrane	82.76	80.88
Os04t0201800-00	Rice	plasma membrane, plastid	55.12	76.37
KXG25873	Sorghum	plasma membrane	82.41	69.76
Solyc03g063030.2.1	Tomato	plasma membrane	28.55	67.66
Bra007103.1-P	Field mustard	plasma membrane	45.06	63.71
GSMUA_Achr1P03170_001	Banana	cytosol, nucleus, plasma membrane	60.5	59.86
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	59.6	58.97
CDY18351	Canola	plastid	53.5	58.55
Solyc11g008440.1.1	Tomato	cytosol, nucleus, plasma membrane	57.81	58.02
CDY44630	Canola	plasma membrane	57.09	57.92
GSMUA_Achr5P10650_001	Banana	cytosol, nucleus, plasma membrane	57.45	57.76
Bra005061.1-P	Field mustard	cytosol, nucleus, plasma membrane	47.4	57.27
PGSC0003DMT400036273	Potato	cytosol, nucleus, plasma membrane	45.6	57.21
CDX78269	Canola	plasma membrane	54.4	57.17
AT2G39130.2	Thale cress	cytosol, nucleus, plasma membrane	56.19	56.91
CDX74865	Canola	plasma membrane	56.37	56.88
CDX73443	Canola	cytosol, nucleus, plasma membrane	54.22	56.24
Bra017088.1-P	Field mustard	cytosol, nucleus, plasma membrane	55.12	56.23
CDX93284	Canola	cytosol, nucleus, plasma membrane	54.94	56.04
Solyc03g063040.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	11.49	52.03
PGSC0003DMT400019190	Potato	cytosol, nucleus, plasma membrane	56.19	51.99
AT3G54830.1	Thale cress	nucleus	49.01	50.0
Solyc03g063050.1.1	Tomato	extracellular, plasma membrane	20.65	43.23
KRG99991	Soybean	cytosol, nucleus, peroxisome	17.06	33.33

Protein Annotations

EnsemblPlants:TraesCSU01G023100.1	EnsemblPlantsGene:TraesCSU01G023100	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF240	PFAM:PF01490
SEG:seg	TMHMM:TMhelix	MapMan:24.2.3.4.7	:	:	:

Description

No Description!

Coordinates

chrUn:-:24260997..24266104

Molecular Weight (calculated)

59884.8 Da

IEP (calculated)

5.992

GRAVY (calculated)

0.397

Length

557 amino acids

Sequence
(BLAST)

001: MRNSVSDQSF VMESDDEEHR LGGSEEEEES DGSSSCGSPR VVEAAGGGQP SSYASHQWPQ SYRQSMDIYS SVQSPCLSGF LGTPTLSRLS SSFLATSFRG
101: KPAPEILKPL LPTALIAATE DDHVDDARKS SHQYLPPSRK ASSLFKIPED QKPLGGGGGH EVGPYRQCSY TQGVMNGVNV LCGVGILSTP YAVRQGGWLG
201: LVILAVLAVL AWYTGVLLRR CLDSKEGLET YPDIGHAAFG TPGRIVISII LYMELYACCI EYLILESDNL SKLFPNAHLT IGGFTLDAHV LFAILTTLVV
301: MPTTWLRDLS CLSFISAGGV VASIVIVSCL FWAGLVDHVG VNKSEGTALN LPGIPIAIGL YGYCYSGHGV FPNIYSSLKK SNQFNAVLFT CIALSTVLFA
401: GAAVMGYIMF GETTESQFTL NMPPNLMSSK IAVWTTVTNP ITKYALTMTP LALSLEELLP TNRQTYGNII MLRSALVLSS LGVALSVPFF GLVMSLVGSL
501: LTMFVAYILP CACFLAILRS TVTWYQIVLC VFIIVVGLCC AGVGTYSSLS KIIQNYQ

Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN

Arabidopsis Description

AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.