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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole

Predictor Summary:
  • plastid 1
  • mitochondrion 1
  • endoplasmic reticulum 3
  • plasma membrane 4
  • extracellular 2
  • golgi 2
  • vacuole 3
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG99573 Soybean cytosol, nucleus, plasma membrane 56.1 64.49
Zm00001d044994_P001 Maize cytosol, plasma membrane, vacuole 52.85 42.48
Solyc06g061260.1.1 Tomato plasma membrane 37.4 23.83
Bra007103.1-P Field mustard plasma membrane 62.6 19.54
Zm00001d043640_P001 Maize plasma membrane 23.58 17.16
VIT_13s0019g04660.t01 Wine grape cytosol, nucleus, plasma membrane 69.92 15.28
Bra017088.1-P Field mustard cytosol, nucleus, plasma membrane 67.48 15.2
CDX93284 Canola cytosol, nucleus, plasma membrane 67.48 15.2
Solyc11g008440.1.1 Tomato cytosol, nucleus, plasma membrane 68.29 15.14
CDY18351 Canola plastid 62.6 15.13
CDY44630 Canola plasma membrane 66.67 14.94
KRG91942 Soybean plasma membrane 65.85 14.89
CDX78269 Canola plasma membrane 63.41 14.72
CDX74865 Canola plasma membrane 65.85 14.67
KRH34828 Soybean plasma membrane 65.85 14.44
AT2G39130.2 Thale cress cytosol, nucleus, plasma membrane 64.23 14.36
Solyc05g053970.2.1 Tomato plasma membrane 39.02 13.64
CDX73443 Canola cytosol, nucleus, plasma membrane 58.54 13.41
Zm00001d048577_P001 Maize cytosol, nucleus, plasma membrane 55.28 11.99
EES06091 Sorghum plasma membrane 56.1 11.98
Os02t0101000-01 Rice cytosol, nucleus, plasma membrane 55.28 11.91
Solyc03g013440.2.1 Tomato plasma membrane 33.33 11.85
TraesCS2B01G065200.1 Wheat cytosol, peroxisome, plasma membrane 53.66 11.85
HORVU2Hr1G008090.4 Barley cytosol, peroxisome, plasma membrane 53.66 11.74
GSMUA_Achr1P03170_001 Banana cytosol, nucleus, plasma membrane 53.66 11.72
TraesCS6A01G002400.1 Wheat cytosol, nucleus, plasma membrane 53.66 11.66
TraesCS6D01G003200.1 Wheat cytosol, nucleus, plasma membrane 53.66 11.58
EER89806 Sorghum cytosol, nucleus, plasma membrane 53.66 11.56
TraesCS2A01G052500.1 Wheat plasma membrane 52.03 11.55
GSMUA_Achr5P10650_001 Banana cytosol, nucleus, plasma membrane 52.03 11.55
TraesCS6B01G007400.1 Wheat cytosol, peroxisome, plasma membrane 52.85 11.55
TraesCSU01G023100.1 Wheat cytosol, peroxisome, plasma membrane 52.03 11.49
Solyc10g084830.1.1 Tomato cytosol, peroxisome, plasma membrane 48.78 11.34
HORVU6Hr1G001480.1 Barley plasma membrane 52.85 10.94
Zm00001d004340_P002 Maize plasma membrane 50.41 10.88
Solyc03g078150.2.1 Tomato peroxisome 41.46 9.71
AT3G54830.1 Thale cress nucleus 43.09 9.71
KXG25873 Sorghum plasma membrane 51.22 9.57
Solyc03g013160.2.1 Tomato plasma membrane 30.08 8.69
Solyc09g098380.1.1 Tomato plasma membrane 30.89 8.6
Solyc02g082520.1.1 Tomato cytosol, peroxisome, plasma membrane 24.39 7.16
Solyc02g082510.1.1 Tomato plasma membrane 22.76 6.59
Solyc03g032090.1.1 Tomato plasma membrane 22.76 6.56
Solyc10g048180.1.1 Tomato plasma membrane 21.14 6.09
Bra005061.1-P Field mustard cytosol, nucleus, plasma membrane 17.89 4.77
Zm00001d037057_P001 Maize cytosol, nucleus, plasma membrane 14.63 3.42
KRH38592 Soybean endoplasmic reticulum 6.5 3.35
Solyc03g063030.2.1 Tomato plasma membrane 4.07 2.13
Solyc03g063050.1.1 Tomato extracellular, plasma membrane 4.07 1.88
PGSC0003DMT400036273 Potato cytosol, nucleus, plasma membrane 4.88 1.35
Solyc05g050440.2.1 Tomato extracellular, plasma membrane, vacuole 0.81 0.58
Os04t0201800-00 Rice plasma membrane, plastid 1.63 0.5
Solyc06g061270.1.1 Tomato cytosol, plasma membrane 0.81 0.48
Protein Annotations
EnsemblPlants:Solyc03g063040.2.1EnsemblPlantsGene:Solyc03g063040.2GO:GO:0003333GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0015171GO:GO:0016020GO:GO:0016021InterPro:AA_transpt_TM
PANTHER:PTHR22950PANTHER:PTHR22950:SF240PFAM:PF01490TMHMM:TMhelixUniParc:UPI00027692B6UniProt:K4BH52
MapMan:35.1:::::
Description
No Description!
Coordinates
chr3:+:33035918..33037009
Molecular Weight (calculated)
13149.1 Da
IEP (calculated)
10.189
GRAVY (calculated)
1.227
Length
123 amino acids
Sequence
(BLAST)
001: MSSLIRCTFA LTLSPVAMSL EELLPSKHTK SHLYPILIRT ALTISTVVVG LAVPFFGLVM ALIGSLLTML VTLILPCVCF LRILKGKTSR LQVTICVLII
101: TVGTASALVG SYSALSKIIQ SMI
Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)
001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN
Arabidopsis Description
AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [cytosol,nucleus,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.