Factsheet for Zm00001d004340_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G023100.1	Wheat	cytosol, peroxisome, plasma membrane	80.88	82.76
KXG25873	Sorghum	plasma membrane	95.44	82.67
TraesCS2A01G052500.1	Wheat	plasma membrane	80.0	82.31
TraesCS2B01G065200.1	Wheat	cytosol, peroxisome, plasma membrane	80.0	81.87
HORVU2Hr1G008090.4	Barley	cytosol, peroxisome, plasma membrane	79.82	80.96
Os04t0201800-00	Rice	plasma membrane, plastid	55.61	78.86
Zm00001d044994_P001	Maize	cytosol, plasma membrane, vacuole	19.82	73.86
Zm00001d048577_P001	Maize	cytosol, nucleus, plasma membrane	72.63	73.02
Zm00001d043640_P001	Maize	plasma membrane	20.53	69.23
Solyc03g063030.2.1	Tomato	plasma membrane	27.19	65.96
Bra007103.1-P	Field mustard	plasma membrane	44.74	64.72
Zm00001d037057_P001	Maize	cytosol, nucleus, plasma membrane	59.12	64.07
GSMUA_Achr1P03170_001	Banana	cytosol, nucleus, plasma membrane	60.7	61.46
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	59.65	60.39
Solyc11g008440.1.1	Tomato	cytosol, nucleus, plasma membrane	57.89	59.46
GSMUA_Achr5P10650_001	Banana	cytosol, nucleus, plasma membrane	57.72	59.39
CDY18351	Canola	plastid	52.98	59.33
CDY44630	Canola	plasma membrane	56.67	58.83
Bra005061.1-P	Field mustard	cytosol, nucleus, plasma membrane	47.54	58.79
CDX74865	Canola	plasma membrane	56.32	58.15
CDX78269	Canola	plasma membrane	53.86	57.92
PGSC0003DMT400036273	Potato	cytosol, nucleus, plasma membrane	44.91	57.66
AT2G39130.2	Thale cress	cytosol, nucleus, plasma membrane	55.61	57.64
Bra017088.1-P	Field mustard	cytosol, nucleus, plasma membrane	54.74	57.14
CDX73443	Canola	cytosol, nucleus, plasma membrane	53.68	56.98
CDX93284	Canola	cytosol, nucleus, plasma membrane	54.56	56.96
PGSC0003DMT400019190	Potato	cytosol, nucleus, plasma membrane	55.96	52.99
AT3G54830.1	Thale cress	nucleus	49.47	51.65
Solyc03g063040.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	10.88	50.41
Zm00001d037229_P001	Maize	plasma membrane	31.23	44.61
Solyc03g063050.1.1	Tomato	extracellular, plasma membrane	20.18	43.23
Zm00001d032325_P001	Maize	mitochondrion, plasma membrane, vacuole	20.35	42.96
Zm00001d041534_P002	Maize	plasma membrane	44.39	41.54
Zm00001d003422_P001	Maize	cytosol, plasma membrane, vacuole	33.16	41.27
Zm00001d052063_P003	Maize	plasma membrane	38.6	40.74
Zm00001d030751_P001	Maize	plasma membrane	45.09	40.66
Zm00001d018336_P002	Maize	plasma membrane	38.95	40.59
Zm00001d018340_P001	Maize	cytosol, peroxisome, plasma membrane	36.84	39.77
Zm00001d031629_P001	Maize	cytosol, plasma membrane, vacuole	11.58	36.67
Zm00001d004633_P001	Maize	plasma membrane	27.72	34.05
KRG99991	Soybean	cytosol, nucleus, peroxisome	17.02	34.04
Zm00001d019225_P001	Maize	plasma membrane	18.6	24.77
Zm00001d017557_P001	Maize	plastid	17.54	23.15
Zm00001d026121_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	17.89	20.61
Zm00001d044387_P001	Maize	nucleus	29.12	19.39

Protein Annotations

EMBL:BT067469	EnsemblPlants:Zm00001d004340_P002	EnsemblPlants:Zm00001d004340_T002	EnsemblPlantsGene:Zm00001d004340	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF240	PFAM:PF01490	ProteinID:ONM18749.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI000195C9FF	UniProt:C0PGQ0	MapMan:24.2.3.4.7	:

Description

Transmembrane amino acid transporter family protein

Coordinates

chr2:-:104759766..104765209

Molecular Weight (calculated)

61722.0 Da

IEP (calculated)

6.231

GRAVY (calculated)

0.321

Length

570 amino acids

Sequence
(BLAST)

001: MRNSVSERSF LIESDDDDDA AVEDGKRRGL GGGGGGDDDD DGSDSSSPCD SPRVVAARCS QPSSYTQQWP QSYRQSIDMY SSVHSPNLSF LGTPSLSRLS
101: NSFLTNSFRG KPPEIISSLI KPLLPTSIAS ASDDQQQQQH EDVRKSSHYL PPSRKASSLQ RIPEDQRPMV GGHEVGPYRQ CSYTQGVMNG VNVLCGVGIL
201: STPYAVKQGG WLGLVILAVL GALAWYTGIL LRRCLDSKDG LETYPDIGHA AFGTAGRIII SIILYMELYA CCIEYLILES DNLSKLFPNA HLTMGNLTLD
301: SHMLFAILTA LVVMPTTWLR DLSCLSFISA GGVIASIVIV SCLFWVGLVD HVGTVESEGT ALNLPGIPIA IGLYGYCYSG HGVFPNIYSS LKKSNQFPAV
401: LFTCIALSTV LFAAAAIMGY IMFGESTESQ FTLNLPPNLV ASKIAVWTTV TNPITKYALT MTPLALSLEE LLPPNKQTYP NIMMLRSALV VSSLIIALSV
501: PFFGLVMSLV GSFLTMFVAY ILPCACFLSI LRSKVTWYQV VLCVFIIVVG LCCVGVGTYS SLSKIIQKYQ

Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN

Arabidopsis Description

AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.