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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra017088.1-P Field mustard cytosol, nucleus, plasma membrane 99.63 99.63
CDY18351 Canola plastid 89.38 95.87
CDY44630 Canola plasma membrane 90.84 90.35
CDX74865 Canola plasma membrane 90.11 89.13
AT2G39130.2 Thale cress cytosol, nucleus, plasma membrane 89.19 88.55
CDX78269 Canola plasma membrane 74.18 76.42
CDX73443 Canola cytosol, nucleus, plasma membrane 73.26 74.49
VIT_13s0019g04660.t01 Wine grape cytosol, nucleus, plasma membrane 73.08 70.87
KRG91942 Soybean plasma membrane 69.41 69.67
Solyc03g063030.2.1 Tomato plasma membrane 29.67 68.94
Solyc03g063040.2.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 15.2 67.48
KRG99573 Soybean cytosol, nucleus, plasma membrane 13.19 67.29
KRH34828 Soybean plasma membrane 69.05 67.2
Solyc11g008440.1.1 Tomato cytosol, nucleus, plasma membrane 67.03 65.95
PGSC0003DMT400036273 Potato cytosol, nucleus, plasma membrane 52.75 64.86
GSMUA_Achr1P03170_001 Banana cytosol, nucleus, plasma membrane 64.47 62.52
GSMUA_Achr5P10650_001 Banana cytosol, nucleus, plasma membrane 61.72 60.83
PGSC0003DMT400019190 Potato cytosol, nucleus, plasma membrane 65.57 59.47
Zm00001d044994_P001 Maize cytosol, plasma membrane, vacuole 15.57 55.56
TraesCS2A01G052500.1 Wheat plasma membrane 56.23 55.42
TraesCS2B01G065200.1 Wheat cytosol, peroxisome, plasma membrane 56.23 55.12
TraesCSU01G023100.1 Wheat cytosol, peroxisome, plasma membrane 56.04 54.94
HORVU2Hr1G008090.4 Barley cytosol, peroxisome, plasma membrane 56.23 54.63
Zm00001d004340_P002 Maize plasma membrane 56.96 54.56
Os02t0101000-01 Rice cytosol, nucleus, plasma membrane 56.41 53.94
Os04t0201800-00 Rice plasma membrane, plastid 39.56 53.73
TraesCS6B01G007400.1 Wheat cytosol, peroxisome, plasma membrane 54.58 52.93
EES06091 Sorghum plasma membrane 55.68 52.78
Zm00001d043640_P001 Maize plasma membrane 16.3 52.66
Zm00001d048577_P001 Maize cytosol, nucleus, plasma membrane 54.58 52.56
TraesCS6A01G002400.1 Wheat cytosol, nucleus, plasma membrane 54.21 52.3
TraesCS6D01G003200.1 Wheat cytosol, nucleus, plasma membrane 54.58 52.28
EER89806 Sorghum cytosol, nucleus, plasma membrane 53.66 51.31
Solyc03g063050.1.1 Tomato extracellular, plasma membrane 24.54 50.38
HORVU6Hr1G001480.1 Barley plasma membrane 54.4 50.0
KRH38592 Soybean endoplasmic reticulum 21.25 48.54
CDX73974 Canola cytosol, nucleus, plasma membrane 35.71 47.68
Zm00001d037057_P001 Maize cytosol, nucleus, plasma membrane 45.79 47.53
KXG25873 Sorghum plasma membrane 56.59 46.96
CDY07919 Canola cytosol, nucleus, plasma membrane 45.05 46.59
CDY55126 Canola plasma membrane 43.77 46.5
CDY10463 Canola plasma membrane 45.79 45.79
CDY40336 Canola plasma membrane 45.79 45.7
CDY35425 Canola plasma membrane 40.66 42.69
CDY22507 Canola plasma membrane 40.66 42.69
CDX73972 Canola extracellular, plastid 10.07 41.98
CDY23868 Canola cytosol, nucleus, plasma membrane 40.66 41.97
CDX79951 Canola cytosol, nucleus, plasma membrane 40.48 41.78
CDY55127 Canola cytosol, plasma membrane, plastid 44.51 41.61
CDY06942 Canola cytosol, peroxisome, plasma membrane 40.66 41.57
CDY67831 Canola cytosol, peroxisome, plasma membrane 40.29 41.28
CDX80809 Canola plasma membrane 44.51 40.98
CDX80808 Canola plasma membrane 18.68 40.32
CDX91000 Canola plasma membrane 29.85 37.91
CDX85556 Canola plasma membrane 29.49 37.53
CDX86397 Canola plasma membrane 25.64 34.57
CDX85233 Canola plasma membrane 25.64 34.57
CDY44419 Canola plasma membrane 25.46 34.32
CDY38090 Canola plasma membrane 22.71 28.64
CDY04048 Canola plasma membrane 25.64 24.14
CDY21456 Canola plasma membrane 17.77 24.07
CDY59097 Canola plastid 19.41 23.93
CDY70145 Canola plasma membrane 17.58 23.82
CDY54797 Canola plastid 19.41 23.82
CDY47026 Canola peroxisome, plastid 18.68 23.67
CDY42861 Canola peroxisome 18.5 23.6
CDY08487 Canola plasma membrane 17.95 23.5
CDY01068 Canola plasma membrane 17.95 23.39
CDY53922 Canola plasma membrane 17.95 23.0
CDX73848 Canola plasma membrane 17.95 23.0
CDX85489 Canola vacuole 18.13 22.92
Protein Annotations
EnsemblPlants:CDX93284EnsemblPlantsGene:GSBRNA2T00155246001GO:A0A078DXW9InterPro:AA_transpt_TMPANTHER:PTHR22950PANTHER:PTHR22950:SF240
PFAM:PF01490ProteinID:CDX93284ProteinID:CDX93284.1SEG:segTMHMM:TMhelixUniParc:UPI0004EDCCE2
MapMan:24.2.3.4.7:::::
Description
BnaC04g46120D
Coordinates
chrLK031875:+:759465..762913
Molecular Weight (calculated)
59731.9 Da
IEP (calculated)
5.030
GRAVY (calculated)
0.247
Length
546 amino acids
Sequence
(BLAST)
001: MNHVPSDQSF YIESEDEDDR KDYAEEEEEE DGHSHSDSSD ANDEHHTQNK PNSYTTAWPQ SYRQSIDLYS SVPSPSIGFL GNNSMTRFGS SFLSSSLIRR
101: HTPESLPVVT KPLLEAEEQA PPPPKHRLSS HGLLPPVPSR RSSMRKDERV SHEVPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLGILFIYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFELDA RHLFALLTTI AVLPTVWLRD
301: LSLLSYISAG GVIASVLVVL SLFWIGLVDD VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA NPNQYPSALL TCFTICTLMY AGVAFMGYTM
401: FGEATESQFT LNLPQDLVAT KIAVWTTEST YALTLSPVAL SLEELIPSRH NKSHWYAIAI RTALVFSTLL VGLAIPFFGL VMSLIGSLLT MLVTLILPPA
501: CFLSIVRRKV TRTQMMLCVL IIVVGAISSV IGSYSALSQI IEKLSS
Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)
001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN
Arabidopsis Description
AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.