CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79951	Canola	cytosol, nucleus, plasma membrane	99.24	99.24
CDY35425	Canola	plasma membrane	87.15	88.65
CDY22507	Canola	plasma membrane	86.2	87.69
CDY06942	Canola	cytosol, peroxisome, plasma membrane	87.15	86.33
CDY67831	Canola	cytosol, peroxisome, plasma membrane	86.39	85.74
AT2G41190.1	Thale cress	cytosol, peroxisome, plasma membrane	84.88	83.77
PGSC0003DMT400080507	Potato	peroxisome	59.36	60.04
Solyc03g078150.2.1	Tomato	peroxisome	59.36	59.81
TraesCS6A01G348300.2	Wheat	cytosol, plasma membrane, vacuole	53.88	59.75
VIT_08s0007g05210.t01	Wine grape	plasma membrane	57.84	59.19
KRH16006	Soybean	cytosol	37.05	57.48
TraesCS6A01G348400.1	Wheat	cytosol, peroxisome, plasma membrane	57.47	57.47
TraesCS6D01G331300.1	Wheat	plasma membrane	55.77	57.28
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plasma membrane	58.41	57.22
TraesCS6D01G331400.2	Wheat	cytosol, peroxisome, plasma membrane	57.28	56.42
TraesCS6B01G382000.2	Wheat	cytosol, peroxisome, plasma membrane	57.28	56.32
Zm00001d018336_P002	Maize	plasma membrane	57.47	55.58
Zm00001d052063_P003	Maize	plasma membrane	56.71	55.56
EES07657	Sorghum	plasma membrane	54.44	55.17
EES07655	Sorghum	plasma membrane	57.28	54.99
TraesCS6B01G381900.1	Wheat	plasma membrane	52.55	54.4
KRH77523	Soybean	cytosol, nucleus, plasma membrane	47.83	53.49
KRG95106	Soybean	cytosol, peroxisome, plasma membrane	46.5	53.48
Zm00001d018340_P001	Maize	cytosol, peroxisome, plasma membrane	52.93	53.03
HORVU6Hr1G083720.2	Barley	plastid	57.28	52.06
KRH66774	Soybean	plasma membrane	24.57	48.69
Os02t0788800-01	Rice	cytosol, peroxisome, plasma membrane	29.3	47.99
CDY18351	Canola	plastid	41.21	42.83
CDX78269	Canola	plasma membrane	41.78	41.7
CDX73974	Canola	cytosol, nucleus, plasma membrane	32.14	41.56
CDX73443	Canola	cytosol, nucleus, plasma membrane	42.16	41.53
CDY40336	Canola	plasma membrane	42.72	41.32
CDY10463	Canola	plasma membrane	42.34	41.03
CDY44630	Canola	plasma membrane	42.53	40.98
CDY55126	Canola	plasma membrane	39.7	40.86
CDX93284	Canola	cytosol, nucleus, plasma membrane	41.97	40.66
CDX74865	Canola	plasma membrane	42.34	40.58
CDY07919	Canola	cytosol, nucleus, plasma membrane	40.45	40.53
CDY44419	Canola	plasma membrane	30.25	39.51
CDX80808	Canola	plasma membrane	18.71	39.13
CDX91000	Canola	plasma membrane	31.57	38.84
CDX85233	Canola	plasma membrane	29.68	38.77
CDX86397	Canola	plasma membrane	29.68	38.77
CDX85556	Canola	plasma membrane	31.38	38.69
CDX80809	Canola	plasma membrane	38.94	34.74
CDY55127	Canola	cytosol, plasma membrane, plastid	38.19	34.59
CDX73972	Canola	extracellular, plastid	8.51	34.35
CDY38090	Canola	plasma membrane	23.25	28.41
CDY04048	Canola	plasma membrane	30.43	27.76
CDY70145	Canola	plasma membrane	20.23	26.55
CDY21456	Canola	plasma membrane	20.04	26.3
CDY59097	Canola	plastid	19.85	23.7
CDY01068	Canola	plasma membrane	18.71	23.63
CDY08487	Canola	plasma membrane	18.53	23.5
CDY54797	Canola	plastid	19.66	23.37
CDY42861	Canola	peroxisome	18.71	23.13
CDX73848	Canola	plasma membrane	18.53	23.0
CDY53922	Canola	plasma membrane	18.53	23.0
CDY47026	Canola	peroxisome, plastid	18.71	22.97
CDX85489	Canola	vacuole	17.58	21.53

Protein Annotations

EnsemblPlants:CDY23868	EnsemblPlantsGene:GSBRNA2T00024299001	GO:A0A078GGU8	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF358	PFAM:PF01490	ProteinID:CDY23868	ProteinID:CDY23868.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEB0AA	UniProt:A0A078GGU8	MapMan:24.2.3.4.7	:

Description

BnaC04g01690DBnaC04g01690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGU8]

Coordinates

chrLK032150:+:345193..347820

Molecular Weight (calculated)

58118.4 Da

IEP (calculated)

4.661

GRAVY (calculated)

0.345

Length

529 amino acids

Sequence
(BLAST)

001: MEKKPEFTFD DDEDSSKYEN DSETDRSDVA DLPGDDDNNN NDEDTFVSQV QWPQSFRETT DSYTIAASPI FGSLRSNPSF YNTSQKPSFY RQSRSNLDVE
101: SKAPFLPERN EESDKASAAQ SVWSRRGSFA EELAIGGYGC SLTQTIFNAI NVMAGVGLLS TPYTLKESGW AGMVILVLFA VICCYTATLM KECFENKTGI
201: ITYPDIGEAA FGIYGRILIC VLLYTELYSY CVEFIILEGD NLTGLFPGTS LDWLGIHIDS QHLFGILTAL IVLPTVWLKD LRIISYLSAG GVLASVLIAL
301: STFFLGATSG IGFHHTGHAV KWNGIPFAIG IYGFCYSGHS VFPNIYQSMA DKTKFTKAVI ITFALCVLMY GGVGIMGYLM FGEATLSQIT LNMPKDLFFS
401: KVAQWTTVTS PFTKFALLMN PLARGIEELL PEGMPENIWC FLLLRTALVA SSVCAAFLIP FFGLVMALIG SILSILVAII MPALCFMRIM GNKATRTQII
501: LSWIIVAIGL VSGTLGTYSS VAKIIKNYE

Best Arabidopsis Sequence Match ( AT2G41190.1 )
(BLAST)

001: MEDKNNDKEK KTDVTFEDDE DNEDLEDNSS KYENDSETDQ SDLGDLPGDA VDRDDDIDEP FISQVQWPQS FRETTDSYTI AASPIFGSLR SNPPSFYRAS
101: RSNLDVESKA PLLPERHDDS DKASATQSAW SHKGSFAEEL PIGGYGCSVI QTIFNAINVM AGVGLLSTPY TVKEAGWASM VILLLFAVIC CYTATLMKDC
201: FENKTGIITY PDIGEAAFGK YGRILICMLL YTELYSYCVE FIILEGDNLT GLFPGTSLDL LGFRLDSKHL FGILTALIVL PTVWLKDLRI ISYLSAGGVI
301: ATALIAVSVF FLGTTGGIGF HHTGQAVKWN GIPFAIGIYG FCYSGHSVFP NIYQSMADKT KFNKAVITCF IICVLLYGGV AIMGYLMFGE ATLSQITLNM
401: PQDQFFSKVA QWTTVVSPFT KYALLMNPLA RSIEELLPER MSENIWCFLL LRTALVASSV CSAFLIPFFG LMMALIGSLL SILVAIIMPA LCFIKIMGNK
501: ATRTQMILSS IIVAIGVVSG TLGTYSSVAK IIRNYQ

Arabidopsis Description

AVT1AAmino acid transporter AVT1A [Source:UniProtKB/Swiss-Prot;Acc:O80668]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.