CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009608.1-P	Field mustard	plasma membrane	99.63	99.63
CDY10463	Canola	plasma membrane	97.62	97.8
AT5G02180.1	Thale cress	plasma membrane	87.39	86.91
CDY55126	Canola	plasma membrane	62.89	66.93
CDY07919	Canola	cytosol, nucleus, plasma membrane	63.8	66.1
CDX73972	Canola	extracellular, plastid	15.72	65.65
CDX73974	Canola	cytosol, nucleus, plasma membrane	48.81	65.28
CDX80808	Canola	plasma membrane	28.52	61.66
CDY55127	Canola	cytosol, plasma membrane, plastid	63.44	59.42
CDX80809	Canola	plasma membrane	63.44	58.52
HORVU2Hr1G075350.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	17.18	54.65
HORVU4Hr1G022660.1	Barley	extracellular	20.84	51.58
Solyc10g084830.1.1	Tomato	cytosol, peroxisome, plasma membrane	48.26	49.91
PGSC0003DMT400028760	Potato	cytosol, peroxisome, plasma membrane	48.08	49.72
CDY18351	Canola	plastid	44.97	48.33
CDX78269	Canola	plasma membrane	46.25	47.74
GSMUA_Achr6P34060_001	Banana	plasma membrane	48.08	47.64
CDY44630	Canola	plasma membrane	47.35	47.18
CDX73443	Canola	cytosol, nucleus, plasma membrane	46.25	47.11
CDX74865	Canola	plasma membrane	47.35	46.92
CDX93284	Canola	cytosol, nucleus, plasma membrane	45.7	45.79
CDY22507	Canola	plasma membrane	41.32	43.46
EES17245	Sorghum	cytosol, peroxisome, plasma membrane	45.52	43.23
CDY35425	Canola	plasma membrane	40.95	43.08
CDX79951	Canola	cytosol, nucleus, plasma membrane	41.5	42.91
CDY23868	Canola	cytosol, nucleus, plasma membrane	41.32	42.72
CDY06942	Canola	cytosol, peroxisome, plasma membrane	40.4	41.39
CDY67831	Canola	cytosol, peroxisome, plasma membrane	40.22	41.28
Zm00001d032325_P001	Maize	mitochondrion, plasma membrane, vacuole	20.29	41.11
HORVU5Hr1G020560.3	Barley	plasma membrane	44.42	41.05
TraesCS5D01G091100.1	Wheat	plasma membrane	44.42	40.77
TraesCS5B01G084900.1	Wheat	plasma membrane	44.24	40.4
TraesCS5A01G081500.1	Wheat	plasma membrane	44.06	40.37
Os12t0574000-01	Rice	plasma membrane	43.51	40.07
Zm00001d041534_P002	Maize	plasma membrane	43.51	39.08
Zm00001d030751_P001	Maize	plasma membrane	44.24	38.29
CDX91000	Canola	plasma membrane	29.62	37.67
CDX85556	Canola	plasma membrane	29.25	37.3
CDY44419	Canola	plasma membrane	27.24	36.79
CDX86397	Canola	plasma membrane	26.87	36.3
Zm00001d031629_P001	Maize	cytosol, plasma membrane, vacuole	11.88	36.11
CDX85233	Canola	plasma membrane	26.69	36.05
CDY38090	Canola	plasma membrane	24.86	31.41
CDY04048	Canola	plasma membrane	27.24	25.69
CDY70145	Canola	plasma membrane	18.28	24.81
CDY21456	Canola	plasma membrane	18.28	24.81
CDY59097	Canola	plastid	19.38	23.93
CDY54797	Canola	plastid	19.38	23.82
CDX85489	Canola	vacuole	18.65	23.61
CDX73848	Canola	plasma membrane	17.92	23.0
CDY53922	Canola	plasma membrane	17.92	23.0
CDY01068	Canola	plasma membrane	17.37	22.67
CDY42861	Canola	peroxisome	17.73	22.66
CDY08487	Canola	plasma membrane	17.0	22.3
CDY47026	Canola	peroxisome, plastid	17.55	22.27

Protein Annotations

EnsemblPlants:CDY40336	EnsemblPlantsGene:GSBRNA2T00069521001	GO:A0A078HRK6	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF313	PFAM:PF01490	ProteinID:CDY40336	ProteinID:CDY40336.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEB91F	UniProt:A0A078HRK6	MapMan:24.2.3.4.7	:

Description

BnaA10g27320DBnaA10g27320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRK6]

Coordinates

chrLK032468:+:167665..170627

Molecular Weight (calculated)

59339.8 Da

IEP (calculated)

6.033

GRAVY (calculated)

0.468

Length

547 amino acids

Sequence
(BLAST)

001: MKLDEEFLHD RDHSFLTDDE ENQADLACSD DEHDGDGRRC GANSDTSSPL SRNRSDNNLT DVPNPPWPQS YRRSMDLMTG MTPPSVSFMP RSLSRRSGSS
101: FHKKQQSSFF DSFSSSASKP LLSQPDPDKE DTILPSHFPS QLKLSVTDLP LPQSNLCSVS QSILNGTNVL CGLGLITMPY AIKESGWLGL LILSFFGVIT
201: CYTGILLKRC LESSPGLQTY PDIGQAAFGI TGRCIISILL YIELYAACVE YIIMMSDNLS GLFPNVSLGI TPGLSLDSAQ TFAVLTTILV LPTVWLKDLS
301: LLSYLSVGGV LASVLLGLCL FWVGAVDGIG FHATGKLMDF GNLPVAIGIF GFGYSGHSVF PNIYSSMKDP SKFPLVLVIC FGFCTVLYIA IAVCGYTMFG
401: EALQSQFTLN MPKHFLPSKI AVWTAVVTPM TKYALTITPI VLSLEELIPM AKMRSHGVSI LFRTILVIST LVVALSVPFF AIVAALIGSF LAMLVALIFP
501: CLCYLSILKG KLTNTQIGLC MFIIIFGLVS GCCGTYSAIS RLADQMT

Best Arabidopsis Sequence Match ( AT5G02180.1 )
(BLAST)

001: MKLDEEFLHD RDHSFLTDDE ENQAALACSD DEHDGDDDGR RGGENSDSSS PLSRDRSDNN LSDVSNPPWP QSYRQSMDLL TGMTPPSVSF MPQSSSRRLA
101: SSFQKKQQSS FCDSLSSSSS KPLLSQPVPD KEETILPVNP QSQLKLSVTD LPLPEPNLCS FSQSVLNGTN VLCGLGLITM PYAIKESGWL GLPILLFFGV
201: ITCYTGVLMK RCLESSPGIQ TYPDIGQAAF GITGRFIISI LLYVELYAAC VEYIIMMSDN LSGLFPNVSL SIASGISLDS PQIFAILTTL LVLPTVWLKD
301: LSLLSYLSVG GVLASILLGI CLFWVGAVDG IGFHATGRVF DLSNLPVTIG IFGFGYSGHS VFPNIYSSMK DPSRFPLVLV ICFSFCTVLY IAVAVCGYTM
401: FGEAVESQFT LNMPKHFFPS KVAVWTAVIT PMTKYALTIT PIVMSLEELI PTAKMRSRGV SILFRTMLVT STLVVALSVP FFAIVAALIG SFLAMLVALI
501: FPCLCYLSIL KGKLSNTQIG LCIFIIVFGV VSGCCGTYSA ISRLANQMTD

Arabidopsis Description

AVT1DAmino acid transporter AVT1D [Source:UniProtKB/Swiss-Prot;Acc:Q8GYS4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.