CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G16740.1	Thale cress	plasma membrane	85.91	87.32
CDX85489	Canola	vacuole	76.44	76.62
HORVU4Hr1G012350.1	Barley	endoplasmic reticulum, plasma membrane	55.66	60.25
VIT_05s0062g01150.t01	Wine grape	plasma membrane	59.35	59.22
PGSC0003DMT400055694	Potato	extracellular, plasma membrane	49.88	58.54
TraesCS4A01G240700.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	58.43	55.97
KRG97383	Soybean	mitochondrion	60.51	55.51
Solyc09g098380.1.1	Tomato	plasma membrane	56.12	54.98
KRH58803	Soybean	mitochondrion	57.74	54.35
GSMUA_Achr6P06880_001	Banana	mitochondrion, plasma membrane, plastid	59.35	54.33
TraesCS4D01G072600.1	Wheat	mitochondrion, plasma membrane	58.43	54.18
KRH31531	Soybean	mitochondrion	56.35	53.98
Zm00001d004633_P001	Maize	plasma membrane	57.74	53.88
Os11t0298000-00	Rice	mitochondrion, plastid	58.43	52.38
TraesCS4B01G074300.1	Wheat	plasma membrane	57.04	52.22
CDX86397	Canola	plasma membrane	29.33	31.36
CDX85233	Canola	plasma membrane	29.33	31.36
CDX73972	Canola	extracellular, plastid	9.47	31.3
CDY44419	Canola	plasma membrane	28.18	30.12
CDX80808	Canola	plasma membrane	16.4	28.06
CDY07919	Canola	cytosol, nucleus, plasma membrane	33.26	27.27
CDX91000	Canola	plasma membrane	27.02	27.21
CDY55126	Canola	plasma membrane	32.1	27.04
CDX85556	Canola	plasma membrane	26.79	27.04
CDX73974	Canola	cytosol, nucleus, plasma membrane	24.48	25.92
CDX78269	Canola	plasma membrane	31.41	25.66
CDX73443	Canola	cytosol, nucleus, plasma membrane	31.41	25.33
CDY18351	Canola	plastid	29.56	25.15
CDY10463	Canola	plasma membrane	31.64	25.09
CDY55127	Canola	cytosol, plasma membrane, plastid	33.72	25.0
CDY40336	Canola	plasma membrane	31.41	24.86
CDY22507	Canola	plasma membrane	29.79	24.81
CDY35425	Canola	plasma membrane	29.56	24.62
CDX80809	Canola	plasma membrane	32.79	23.95
CDY23868	Canola	cytosol, nucleus, plasma membrane	28.41	23.25
CDX79951	Canola	cytosol, nucleus, plasma membrane	28.41	23.25
CDY06942	Canola	cytosol, peroxisome, plasma membrane	28.64	23.22
CDY44630	Canola	plasma membrane	29.33	23.13
CDY67831	Canola	cytosol, peroxisome, plasma membrane	28.41	23.08
CDY70145	Canola	plasma membrane	21.25	22.83
CDX74865	Canola	plasma membrane	29.1	22.83
CDX93284	Canola	cytosol, nucleus, plasma membrane	28.64	22.71
CDY21456	Canola	plasma membrane	20.79	22.33
CDY59097	Canola	plastid	22.17	21.67
CDY54797	Canola	plastid	22.17	21.57
CDY04048	Canola	plasma membrane	28.64	21.38
CDY08487	Canola	plasma membrane	20.32	21.1
CDY01068	Canola	plasma membrane	20.32	21.0
CDX73848	Canola	plasma membrane	20.55	20.89
CDY53922	Canola	plasma membrane	20.55	20.89
CDY42861	Canola	peroxisome	18.48	18.69
CDY47026	Canola	peroxisome, plastid	18.48	18.56

Protein Annotations

EnsemblPlants:CDY38090	EnsemblPlantsGene:GSBRNA2T00065357001	GO:A0A078HI25	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF219	PFAM:PF01490	ProteinID:CDY38090	ProteinID:CDY38090.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEF02D	UniProt:A0A078HI25	MapMan:24.2.3.4.7	:

Description

BnaC02g06830DBnaC02g06830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HI25]

Coordinates

chrLK032416:+:55583..57475

Molecular Weight (calculated)

46596.9 Da

IEP (calculated)

9.402

GRAVY (calculated)

0.688

Length

433 amino acids

Sequence
(BLAST)

001: MSGTKVCIAC VEENKLCECH HENPVKELGL SHEASENSSV LHSVINMVGM LIGLGQLSMP YAVESGGWIS IFLLISLGVL TTYTSHILGN CLRRNPKSKS
101: YSDIGYSAFG RHGHLLASLF IYLEIFMALV SYTISLHDNI AAAFPATFTN LHNGSFPAAK LTAVAVAIAL PSLWIRNLSS ISFLSSGGIL MSAVIFMSVV
201: YTAVFGGVLD DGRIPVLRLR NIPTVSGVYL FGFGGHIVFP NLYTSMKDPS KFTKVSIVSF ATVTALYTAL AITGAKMFGP NINPQVTLSL PKHLLVTKIA
301: LWATVLTPMT KYALEFAPLA IQLERSLPLT MSDRTKLVTR GLVGSTLLLV ILALALTVPY FGYVLSLTGS LVSVTIAVIL PCAFYVKICW DGMSKFTRAA
401: NVVFVVFGCV LGVLGSFDSS KLLVNKLVRV HGN

Best Arabidopsis Sequence Match ( AT5G16740.1 )
(BLAST)

001: MVCVACVEEN KGCECEHEKP VRELVLEAAS ENSSFLHSVI NMVGMLIGLG QLSMPYAVES GGWMSIFLLI SFGILTTYTS HILGKCIRRN PKSKSYSDIG
101: YSAFGRHGRL IVCLFIYLEI FMALVSYTIS LHDNISAAFP ATFSNHGHFP AAKLTAVAVA IALPSLWIRD LSSISFLSSG GILMSAIIFG SVVYTAIFGG
201: VIDDGKIPVL RLENIPTVSG IYLFSFGGHI VFPNLYTSMK DPSKFTKVSI VSFATVTALY GALAITGAKM FGPSVNSQIT LSLPKHLVVT KIALWATVLT
301: PMTKYALEFA PLAIQLERSL PSTMTDRTKL VARGLMGSAL LLVILALALT VPYFGYVLSL TGSLVSVTIA VTLPSAFYLK ICWDGMTKFT RAANLGFVVL
401: GCVLGVLGSF ESSKLLVKEL VRVHGG

Arabidopsis Description

AVT1HAmino acid transporter AVT1H [Source:UniProtKB/Swiss-Prot;Acc:Q9LFE3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.