Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G240700.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 89.43 | 93.58 |
| HORVU4Hr1G012350.1 | Barley | endoplasmic reticulum, plasma membrane | 79.07 | 93.5 |
| TraesCS4D01G072600.1 | Wheat | mitochondrion, plasma membrane | 90.06 | 91.22 |
| Os11t0298000-00 | Rice | mitochondrion, plastid | 73.57 | 72.05 |
| Zm00001d004633_P001 | Maize | plasma membrane | 69.13 | 70.47 |
| GSMUA_Achr6P06880_001 | Banana | mitochondrion, plasma membrane, plastid | 64.27 | 64.27 |
| VIT_05s0062g01150.t01 | Wine grape | plasma membrane | 58.56 | 63.82 |
| PGSC0003DMT400055694 | Potato | extracellular, plasma membrane | 46.3 | 59.35 |
| CDY38090 | Canola | plasma membrane | 52.22 | 57.04 |
| AT5G16740.1 | Thale cress | plasma membrane | 51.37 | 57.04 |
| Solyc09g098380.1.1 | Tomato | plasma membrane | 53.28 | 57.01 |
| KRH58803 | Soybean | mitochondrion | 53.7 | 55.22 |
| Bra023581.1-P | Field mustard | plasma membrane | 35.73 | 53.65 |
| KRG97383 | Soybean | mitochondrion | 53.49 | 53.6 |
| KRH31531 | Soybean | mitochondrion | 48.84 | 51.11 |
| CDX85489 | Canola | vacuole | 39.75 | 43.52 |
| TraesCS7B01G093100.1 | Wheat | plasma membrane | 29.6 | 35.09 |
| TraesCS1B01G058900.1 | Wheat | plasma membrane | 30.44 | 33.64 |
| TraesCS2B01G342900.1 | Wheat | plasma membrane | 29.81 | 33.18 |
| TraesCS2B01G343300.2 | Wheat | plasma membrane | 30.44 | 32.73 |
| TraesCS2B01G299200.1 | Wheat | plasma membrane | 27.27 | 31.7 |
| TraesCS4B01G285800.1 | Wheat | peroxisome, plasma membrane, vacuole | 28.33 | 31.09 |
| TraesCS4B01G285500.1 | Wheat | plasma membrane | 27.91 | 30.63 |
| TraesCS3B01G499000.1 | Wheat | plasma membrane | 25.79 | 29.83 |
| TraesCS2B01G343200.2 | Wheat | plasma membrane | 28.12 | 29.42 |
| TraesCS2B01G065200.1 | Wheat | cytosol, peroxisome, plasma membrane | 33.19 | 28.19 |
| TraesCS6B01G381900.1 | Wheat | plasma membrane | 28.54 | 26.42 |
| TraesCS6B01G007400.1 | Wheat | cytosol, peroxisome, plasma membrane | 30.66 | 25.75 |
| TraesCS6B01G382000.2 | Wheat | cytosol, peroxisome, plasma membrane | 28.33 | 24.91 |
| TraesCS5B01G084900.1 | Wheat | plasma membrane | 29.39 | 23.21 |
| TraesCS5B01G485400.1 | Wheat | plasma membrane | 18.39 | 20.67 |
| TraesCS5B01G173000.1 | Wheat | plasma membrane | 17.97 | 20.19 |
| TraesCS5B01G485500.1 | Wheat | plasma membrane | 17.76 | 19.76 |
| TraesCS2B01G297200.1 | Wheat | plasma membrane | 17.12 | 19.29 |
| TraesCS6B01G271500.1 | Wheat | plasma membrane | 17.12 | 19.24 |
| TraesCS2B01G421800.1 | Wheat | plasma membrane | 16.7 | 18.68 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G074300.1 | EnsemblPlantsGene:TraesCS4B01G074300 | InterPro:AA_transpt_TM | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF219 | PFAM:PF01490 |
| SEG:seg | TMHMM:TMhelix | MapMan:24.2.3.4.7 | : | : | : |
Description
No Description!
Coordinates
chr4B:+:69429687..69431637
Molecular Weight (calculated)
50741.9 Da
IEP (calculated)
9.693
GRAVY (calculated)
0.639
Length
473 amino acids
Sequence
(BLAST)
(BLAST)
001: MHGARLAAQQ LGRGCDACDV EAGKPCRCAQ GQEEDADFVA HMVSNRHIRQ EETTRAGGGR VAAAAVTTQQ HHSKPASTFA QSVINMVGML IGLGQLSTPY
101: ALENGGWASI FLLVGLGIMC AYTAHIIGRC LDEEPSSKTY QDIGQQAFGS KGRLIASAFI YLEIFFALVS YTISLSDNIP LVFAGVRLHL PWLRLSTTQL
201: LTVMAVLVAL PSLWLRNLSS ISFLSFVGIL MSMVILVTIL CTAAFSNVGL GKHIPVLRLD KIPTVSGLYM FSYAGHIVFP NIYTAMKDRS SFTRVSVTNF
301: FMVAVLYTTL AFVGASLFGP SVNSQVTLSM PPGLLVTKVA LWATVLTPVT KYALEFAPFA IQLEHHLPAT MGPRARIIIR GSIGSAGLLL ILALALSVPY
401: FQYVLSLTGS LISVAISVIF PCGFYLKIRW GRLSRPVVVL NAAMIAVGFV LAVVGTASSA KLLVKSIQNG HVA
101: ALENGGWASI FLLVGLGIMC AYTAHIIGRC LDEEPSSKTY QDIGQQAFGS KGRLIASAFI YLEIFFALVS YTISLSDNIP LVFAGVRLHL PWLRLSTTQL
201: LTVMAVLVAL PSLWLRNLSS ISFLSFVGIL MSMVILVTIL CTAAFSNVGL GKHIPVLRLD KIPTVSGLYM FSYAGHIVFP NIYTAMKDRS SFTRVSVTNF
301: FMVAVLYTTL AFVGASLFGP SVNSQVTLSM PPGLLVTKVA LWATVLTPVT KYALEFAPFA IQLEHHLPAT MGPRARIIIR GSIGSAGLLL ILALALSVPY
401: FQYVLSLTGS LISVAISVIF PCGFYLKIRW GRLSRPVVVL NAAMIAVGFV LAVVGTASSA KLLVKSIQNG HVA
001: MVCVACVEEN KGCECEHEKP VRELVLEAAS ENSSFLHSVI NMVGMLIGLG QLSMPYAVES GGWMSIFLLI SFGILTTYTS HILGKCIRRN PKSKSYSDIG
101: YSAFGRHGRL IVCLFIYLEI FMALVSYTIS LHDNISAAFP ATFSNHGHFP AAKLTAVAVA IALPSLWIRD LSSISFLSSG GILMSAIIFG SVVYTAIFGG
201: VIDDGKIPVL RLENIPTVSG IYLFSFGGHI VFPNLYTSMK DPSKFTKVSI VSFATVTALY GALAITGAKM FGPSVNSQIT LSLPKHLVVT KIALWATVLT
301: PMTKYALEFA PLAIQLERSL PSTMTDRTKL VARGLMGSAL LLVILALALT VPYFGYVLSL TGSLVSVTIA VTLPSAFYLK ICWDGMTKFT RAANLGFVVL
401: GCVLGVLGSF ESSKLLVKEL VRVHGG
101: YSAFGRHGRL IVCLFIYLEI FMALVSYTIS LHDNISAAFP ATFSNHGHFP AAKLTAVAVA IALPSLWIRD LSSISFLSSG GILMSAIIFG SVVYTAIFGG
201: VIDDGKIPVL RLENIPTVSG IYLFSFGGHI VFPNLYTSMK DPSKFTKVSI VSFATVTALY GALAITGAKM FGPSVNSQIT LSLPKHLVVT KIALWATVLT
301: PMTKYALEFA PLAIQLERSL PSTMTDRTKL VARGLMGSAL LLVILALALT VPYFGYVLSL TGSLVSVTIA VTLPSAFYLK ICWDGMTKFT RAANLGFVVL
401: GCVLGVLGSF ESSKLLVKEL VRVHGG
Arabidopsis Description
AVT1HAmino acid transporter AVT1H [Source:UniProtKB/Swiss-Prot;Acc:Q9LFE3]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.