Factsheet for Bra023581.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85489	Canola	vacuole	100.0	72.92
AT5G16740.1	Thale cress	plasma membrane	83.81	61.97
HORVU4Hr1G012350.1	Barley	endoplasmic reticulum, plasma membrane	51.75	40.75
VIT_05s0062g01150.t01	Wine grape	plasma membrane	54.29	39.4
KRG97383	Soybean	mitochondrion	57.78	38.56
TraesCS4A01G240700.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	55.24	38.5
PGSC0003DMT400055694	Potato	extracellular, plasma membrane	44.44	37.94
Solyc09g098380.1.1	Tomato	plasma membrane	53.02	37.78
TraesCS4D01G072600.1	Wheat	mitochondrion, plasma membrane	54.92	37.05
Zm00001d004633_P001	Maize	plasma membrane	54.29	36.85
GSMUA_Achr6P06880_001	Banana	mitochondrion, plasma membrane, plastid	54.92	36.58
KRH58803	Soybean	mitochondrion	52.38	35.87
KRH31531	Soybean	mitochondrion	51.43	35.84
TraesCS4B01G074300.1	Wheat	plasma membrane	53.65	35.73
Os11t0298000-00	Rice	mitochondrion, plastid	53.97	35.2
Bra007103.1-P	Field mustard	plasma membrane	30.48	24.37
Bra025369.1-P	Field mustard	plasma membrane	27.94	21.73
Bra033075.1-P	Field mustard	plasma membrane	26.67	20.74
Bra001315.1-P	Field mustard	cytosol, peroxisome, plasma membrane	33.02	19.7
Bra005712.1-P	Field mustard	plasma membrane	30.79	19.32
Bra005061.1-P	Field mustard	cytosol, nucleus, plasma membrane	26.35	18.0
Bra009608.1-P	Field mustard	plasma membrane	29.21	16.82
Bra000217.1-P	Field mustard	plasma membrane	26.98	16.35
Bra017088.1-P	Field mustard	cytosol, nucleus, plasma membrane	27.94	16.12
Bra016949.1-P	Field mustard	cytosol, peroxisome, plasma membrane	26.35	15.54
Bra000591.1-P	Field mustard	plasma membrane	19.68	15.35
Bra004605.1-P	Field mustard	cytosol, nucleus, plasma membrane	25.71	15.31
Bra001425.1-P	Field mustard	plasma membrane	20.32	15.02
Bra033558.1-P	Field mustard	plasma membrane	16.51	14.53
Bra034803.1-P	Field mustard	plasma membrane	19.68	14.52
Bra029326.1-P	Field mustard	peroxisome	16.83	12.38

Protein Annotations

EnsemblPlants:Bra023581.1	EnsemblPlants:Bra023581.1-P	EnsemblPlantsGene:Bra023581	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF219	PFAM:PF01490	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002543054	UniProt:M4E478	MapMan:24.2.3.4.7	:	:	:

Description

AT5G16740 (E=4e-108) | amino acid transporter family protein

Coordinates

chrA02:-:4045671..4049540

Molecular Weight (calculated)

33974.8 Da

IEP (calculated)

8.552

GRAVY (calculated)

0.607

Length

315 amino acids

Sequence
(BLAST)

001: MSGTKVCIAC VEENKVCECH HENPVKELGL SHEASENSSF LHSVINMVGM LIGLGQLSMP YAVESGGWIS IFLLISLGVL TTYTSHILGN CLRRNPKSKS
101: YSDIGYSAFG LHGRLLASLF IYLEIFMALV SYTISLHDNI AAAFPATFTN LHNGSFPAAK LTAVAVAIAL PSLWIRNLSS ISYLSSGGIF MSAVIFMSVV
201: YTAVFGGVID DGRIPVLRLG NIPTVSGVYL FGFGGHIVFP NLYTSMKDPS KFTKSVTISV ILPCAFYVKI CWDGMSKFTR AANVVFVVFG CVLGVLGSFD
301: SSKLLVNKLV RVHGN

Best Arabidopsis Sequence Match ( AT5G16740.1 )
(BLAST)

001: MVCVACVEEN KGCECEHEKP VRELVLEAAS ENSSFLHSVI NMVGMLIGLG QLSMPYAVES GGWMSIFLLI SFGILTTYTS HILGKCIRRN PKSKSYSDIG
101: YSAFGRHGRL IVCLFIYLEI FMALVSYTIS LHDNISAAFP ATFSNHGHFP AAKLTAVAVA IALPSLWIRD LSSISFLSSG GILMSAIIFG SVVYTAIFGG
201: VIDDGKIPVL RLENIPTVSG IYLFSFGGHI VFPNLYTSMK DPSKFTKVSI VSFATVTALY GALAITGAKM FGPSVNSQIT LSLPKHLVVT KIALWATVLT
301: PMTKYALEFA PLAIQLERSL PSTMTDRTKL VARGLMGSAL LLVILALALT VPYFGYVLSL TGSLVSVTIA VTLPSAFYLK ICWDGMTKFT RAANLGFVVL
401: GCVLGVLGSF ESSKLLVKEL VRVHGG

Arabidopsis Description

AVT1HAmino acid transporter AVT1H [Source:UniProtKB/Swiss-Prot;Acc:Q9LFE3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.