Factsheet for Bra016949.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06942	Canola	cytosol, peroxisome, plasma membrane	99.81	99.81
CDY67831	Canola	cytosol, peroxisome, plasma membrane	98.69	98.87
Bra000217.1-P	Field mustard	plasma membrane	91.39	93.85
AT2G41190.1	Thale cress	cytosol, peroxisome, plasma membrane	88.58	88.25
Bra004605.1-P	Field mustard	cytosol, nucleus, plasma membrane	85.96	86.77
PGSC0003DMT400080507	Potato	peroxisome	60.86	62.14
Solyc03g078150.2.1	Tomato	peroxisome	60.49	61.52
VIT_08s0007g05210.t01	Wine grape	plasma membrane	58.99	60.93
TraesCS6A01G348300.2	Wheat	cytosol, plasma membrane, vacuole	53.18	59.54
TraesCS6A01G348400.1	Wheat	cytosol, peroxisome, plasma membrane	57.87	58.41
KRH16006	Soybean	cytosol	37.27	58.36
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plasma membrane	58.99	58.33
TraesCS6B01G382000.2	Wheat	cytosol, peroxisome, plasma membrane	57.68	57.25
TraesCS6D01G331400.2	Wheat	cytosol, peroxisome, plasma membrane	57.3	56.98
TraesCS6D01G331300.1	Wheat	plasma membrane	54.87	56.89
Zm00001d018336_P002	Maize	plasma membrane	56.93	55.58
EES07657	Sorghum	plasma membrane	54.31	55.56
Zm00001d052063_P003	Maize	plasma membrane	56.18	55.56
KRG95106	Soybean	cytosol, peroxisome, plasma membrane	47.38	55.0
EES07655	Sorghum	plasma membrane	56.74	54.99
KRH77523	Soybean	cytosol, nucleus, plasma membrane	48.69	54.97
TraesCS6B01G381900.1	Wheat	plasma membrane	52.43	54.79
Zm00001d018340_P001	Maize	cytosol, peroxisome, plasma membrane	52.62	53.22
HORVU6Hr1G083720.2	Barley	plastid	57.12	52.41
KRH66774	Soybean	plasma membrane	25.28	50.56
Os02t0788800-01	Rice	cytosol, peroxisome, plasma membrane	29.4	48.61
Bra007103.1-P	Field mustard	plasma membrane	35.77	48.48
Bra033075.1-P	Field mustard	plasma membrane	30.9	40.74
Bra017088.1-P	Field mustard	cytosol, nucleus, plasma membrane	41.39	40.48
Bra009608.1-P	Field mustard	plasma membrane	41.2	40.22
Bra001315.1-P	Field mustard	cytosol, peroxisome, plasma membrane	39.7	40.15
Bra025369.1-P	Field mustard	plasma membrane	30.34	40.0
Bra005061.1-P	Field mustard	cytosol, nucleus, plasma membrane	34.08	39.48
Bra005712.1-P	Field mustard	plasma membrane	36.7	39.04
Bra023581.1-P	Field mustard	plasma membrane	15.54	26.35
Bra000591.1-P	Field mustard	plasma membrane	19.48	25.74
Bra029326.1-P	Field mustard	peroxisome	17.79	22.2
Bra001425.1-P	Field mustard	plasma membrane	17.6	22.07
Bra033558.1-P	Field mustard	plasma membrane	14.61	21.79
Bra034803.1-P	Field mustard	plasma membrane	17.23	21.55

Protein Annotations

EnsemblPlants:Bra016949.1	EnsemblPlants:Bra016949.1-P	EnsemblPlantsGene:Bra016949	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF358	PFAM:PF01490	SEG:seg	TMHMM:TMhelix
UniParc:UPI00025452F2	UniProt:M4DKC0	MapMan:24.2.3.4.7	:	:	:

Description

AT2G41190 (E=4e-248) | amino acid transporter family protein

Coordinates

chrA04:-:17432028..17434655

Molecular Weight (calculated)

58639.0 Da

IEP (calculated)

4.607

GRAVY (calculated)

0.349

Length

534 amino acids

Sequence
(BLAST)

001: MDVNNKDKEK KIEFTFEDDE DLEDTSKYEN DSDNTDQSDL GDLPGDDDNN NNDDTFISQV QWPQSFRETT DSYTIAASPI FGSLLSNPSF YTPSFYRQSK
101: SNLDVESKAP LLPERNEESD KASVTQSVWS HKGSFAEELP IGGYGCSFTQ TIFNAINVMA GVGLLSTPFT VKEAGWASMV ILLLFAVICC YTATLMKDCF
201: EAKTGIITYP DIGEAAFGKY GRILICVILY TELYSYCVEF IILEGDNLTG LFPGTSIDWL GIRIDSKHLF GIFTALVVLP TVWLKDLRII SYLSAGGVIA
301: TVLIAVSTFF LGTTGGIGFN HTGPAVKWNG IPFAIGIYGF CYSGHSVFPN IYQSMADKTK FNKAVITTFI LCVLLYGGVA IMGYCMFGEA TLSQITLNMP
401: KGLFFSKVAQ WTTVVSPFTK YALLMNPLAR SIEELLPERI SENIWCFLLL RTALVASSVC SAFLIPFFGL VMALIGSFLS ILVAIVMPAL CFIRIMGNKA
501: TRTQMILSST IVVIGLVSGA LGTYSSVAKI IRNY

Best Arabidopsis Sequence Match ( AT2G41190.1 )
(BLAST)

001: MEDKNNDKEK KTDVTFEDDE DNEDLEDNSS KYENDSETDQ SDLGDLPGDA VDRDDDIDEP FISQVQWPQS FRETTDSYTI AASPIFGSLR SNPPSFYRAS
101: RSNLDVESKA PLLPERHDDS DKASATQSAW SHKGSFAEEL PIGGYGCSVI QTIFNAINVM AGVGLLSTPY TVKEAGWASM VILLLFAVIC CYTATLMKDC
201: FENKTGIITY PDIGEAAFGK YGRILICMLL YTELYSYCVE FIILEGDNLT GLFPGTSLDL LGFRLDSKHL FGILTALIVL PTVWLKDLRI ISYLSAGGVI
301: ATALIAVSVF FLGTTGGIGF HHTGQAVKWN GIPFAIGIYG FCYSGHSVFP NIYQSMADKT KFNKAVITCF IICVLLYGGV AIMGYLMFGE ATLSQITLNM
401: PQDQFFSKVA QWTTVVSPFT KYALLMNPLA RSIEELLPER MSENIWCFLL LRTALVASSV CSAFLIPFFG LMMALIGSLL SILVAIIMPA LCFIKIMGNK
501: ATRTQMILSS IIVAIGVVSG TLGTYSSVAK IIRNYQ

Arabidopsis Description

AVT1AAmino acid transporter AVT1A [Source:UniProtKB/Swiss-Prot;Acc:O80668]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.