Factsheet for Bra033558.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 1
plasma membrane 3
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012567.1-P
Bra013361.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38250.1	Bra012567.1-P	AT4G19030.1	21798944
AT4G38250.1	Bra013361.1-P	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54797	Canola	plastid	99.44	80.0
AT4G38250.1	Thale cress	plasma membrane	91.34	75.0
Bra000591.1-P	Field mustard	plasma membrane	75.14	66.58
VIT_03s0038g03900.t01	Wine grape	plasma membrane	68.44	57.51
Bra029326.1-P	Field mustard	peroxisome	61.73	51.64
Solyc10g048180.1.1	Tomato	plasma membrane	59.22	49.65
GSMUA_Achr1P02810_001	Banana	cytosol, plasma membrane, vacuole	54.19	49.24
PGSC0003DMT400033422	Potato	plasma membrane	58.66	48.61
Os04t0565500-01	Rice	cytosol, plasma membrane, plastid	56.98	48.0
TraesCS6D01G235500.1	Wheat	plasma membrane	56.42	47.98
TraesCS6A01G254100.1	Wheat	plasma membrane	56.42	47.98
TraesCS6B01G271500.1	Wheat	plasma membrane	56.42	47.98
HORVU6Hr1G064740.1	Barley	plasma membrane	56.15	47.74
TraesCS2B01G421800.1	Wheat	plasma membrane	55.87	47.28
TraesCS2D01G400900.1	Wheat	plasma membrane	55.87	47.28
TraesCS2A01G403800.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	55.59	47.04
GSMUA_Achr5P11060_001	Banana	plasma membrane	51.96	46.97
EES07473	Sorghum	plasma membrane	55.59	46.71
GSMUA_Achr4P25490_001	Banana	plasma membrane	51.12	46.68
Zm00001d017557_P001	Maize	plastid	55.87	46.3
GSMUA_AchrUn_...	Banana	plasma membrane, plastid, vacuole	52.23	44.74
OQU82139	Sorghum	peroxisome	53.07	44.29
Os02t0670900-02	Rice	endoplasmic reticulum, plasma membrane, plastid	57.26	42.09
EES12671	Sorghum	plastid	56.7	40.93
Zm00001d026121_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	56.15	40.61
Bra001425.1-P	Field mustard	plasma membrane	36.03	30.28
Bra034803.1-P	Field mustard	plasma membrane	35.2	29.51
Bra007103.1-P	Field mustard	plasma membrane	22.07	20.05
Bra025369.1-P	Field mustard	plasma membrane	21.51	19.01
Bra033075.1-P	Field mustard	plasma membrane	20.67	18.27
Bra023581.1-P	Field mustard	plasma membrane	14.53	16.51
Bra001315.1-P	Field mustard	cytosol, peroxisome, plasma membrane	22.91	15.53
Bra005712.1-P	Field mustard	plasma membrane	21.23	15.14
Bra004605.1-P	Field mustard	cytosol, nucleus, plasma membrane	22.07	14.93
Bra009608.1-P	Field mustard	plasma membrane	22.63	14.81
Bra000217.1-P	Field mustard	plasma membrane	21.51	14.81
Bra016949.1-P	Field mustard	cytosol, peroxisome, plasma membrane	21.79	14.61
Bra017088.1-P	Field mustard	cytosol, nucleus, plasma membrane	21.79	14.29
Bra005061.1-P	Field mustard	cytosol, nucleus, plasma membrane	16.2	12.58

Protein Annotations

MapMan:24.2.3.4.4	InterPro:AA_transpt_TM	EnsemblPlantsGene:Bra033558	EnsemblPlants:Bra033558.1	EnsemblPlants:Bra033558.1-P	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0006810	GO:GO:0008150	GO:GO:0015175	GO:GO:0015804	GO:GO:0016020
GO:GO:0016021	UniProt:M4EXM1	PFAM:PF01490	PANTHER:PTHR22950	PANTHER:PTHR22950:SF464	TMHMM:TMhelix
UniParc:UPI000253F959	SEG:seg	:	:	:	:

Description

AT4G38250 (E=2e-158) | amino acid transporter family protein

Coordinates

chrA06:-:26239302..26240378

Molecular Weight (calculated)

38877.3 Da

IEP (calculated)

5.049

GRAVY (calculated)

0.869

Length

358 amino acids

Sequence
(BLAST)

001: MLLVHPRRKL DSFNGGGGFS KIGSFGDLGF AVCGSLGRLV VDLFIILSQA GFCVGYLIFI GTTLANIFDP DSPTSLSLRH QITTLGSEFL GVSSKSLYIW
101: GCFPFQLGLN SIKTLTHLAP LSIFADVVDL AAMAVVIVED SMIILKQRPD VVAFGGFSLF FYGMGVAVYS FEGVGMVLPL ESEMKDKDKF GKVLALGMGF
201: ISFIYIAFGF LGYLAFGEDT MDIITGNLGA GLISTIVQLG LCINLFFTFP LMMNPVFEIV ERRFSGGMYS AWLRWLLVLA VTLVALFVPN FTDFLSLVGS
301: STCCILGFVL PALFHLLVFK EEMGWKQWSL DMAIVGLGVV LAVSGTWSSL SEIFSVKV

Best Arabidopsis Sequence Match ( AT4G38250.1 )
(BLAST)

001: MGFQNEASSS SYTLKIPPPA REDSPLLGKG PPLSSQFKTF ANVFIAVVGA GVLGLPYAFK RTGWLMGVLL LVSVSVLTHH CMMLLVYTRR KLDSFNAGIS
101: KIGSFGDLGF AVCGSLGRIV VDLFIILSQA GFCVGYLIFI GTTLANLSDP ESPTSLRHQF TRLGSEFLGV SSKSLYIWGC FPFQLGLNSI KTLTHLAPLS
201: IFADIVDLGA MAVVIVEDSM IILKQRPDVV AFGGMSLFLY GMGVAVYSFE GVGMVLPLES EMKDKDKFGK VLALGMGFIS LIYIAFGILG YLAFGEDTMD
301: IITANLGAGL VSTVVQLGLC INLFFTFPLM MNPVFEIVER RFSRGMYSAW LRWVLVLAVT LVALFVPNFA DFLSLVGSST CCVLGFVLPA LFHLLVFKEE
401: MGWLQWSSDT AIVVLGVVLA VSGTWSSLSE IFSVKV

Arabidopsis Description

AVT3CAmino acid transporter AVT3C [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.