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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 3
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:plasma membrane
Plant-mPloc:golgi
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g071920.2.1
Solyc03g005980.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G38250.1 Solyc02g071920.2.1 AT4G19030.1 21798944
AT4G38250.1 Solyc03g005980.2.1 AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400033422 Potato plasma membrane 93.91 92.82
CDY70145 Canola plasma membrane 59.48 63.03
CDY21456 Canola plasma membrane 59.25 62.78
AT2G42005.1 Thale cress plasma membrane 60.19 62.23
Bra000591.1-P Field mustard plasma membrane 58.78 62.13
Solyc02g082510.1.1 Tomato plasma membrane 60.66 60.94
Solyc03g032090.1.1 Tomato plasma membrane 59.72 59.72
VIT_03s0038g03900.t01 Wine grape plasma membrane 59.48 59.62
AT4G38250.1 Thale cress plasma membrane 60.66 59.4
Bra033558.1-P Field mustard plasma membrane 49.65 59.22
CDY59097 Canola plastid 60.19 58.01
CDY54797 Canola plastid 59.72 57.3
GSMUA_Achr1P02810_001 Banana cytosol, plasma membrane, vacuole 51.05 55.33
TraesCS6A01G254100.1 Wheat plasma membrane 53.63 54.39
TraesCS6B01G271500.1 Wheat plasma membrane 53.63 54.39
TraesCS6D01G235500.1 Wheat plasma membrane 53.63 54.39
GSMUA_Achr5P11060_001 Banana plasma membrane 50.12 54.04
HORVU6Hr1G064740.1 Barley plasma membrane 52.93 53.68
TraesCS2D01G400900.1 Wheat plasma membrane 53.16 53.66
TraesCS2B01G421800.1 Wheat plasma membrane 53.16 53.66
TraesCS2A01G403800.1 Wheat endoplasmic reticulum, plasma membrane, plastid, vacuole 53.16 53.66
Os04t0565500-01 Rice cytosol, plasma membrane, plastid 53.16 53.41
Solyc02g082520.1.1 Tomato cytosol, peroxisome, plasma membrane 51.52 52.51
EES07473 Sorghum plasma membrane 52.22 52.35
GSMUA_Achr4P25490_001 Banana plasma membrane 47.54 51.79
Zm00001d017557_P001 Maize plastid 51.99 51.39
GSMUA_AchrUn_... Banana plasma membrane, plastid, vacuole 49.88 50.96
OQU82139 Sorghum peroxisome 50.82 50.58
Os02t0670900-02 Rice endoplasmic reticulum, plasma membrane, plastid 52.22 45.79
EES12671 Sorghum plastid 53.16 45.77
Zm00001d026121_P001 Maize cytosol, peroxisome, plasma membrane, plastid 52.69 45.45
Solyc06g061260.1.1 Tomato plasma membrane 9.84 21.76
Solyc05g050440.2.1 Tomato extracellular, plasma membrane, vacuole 8.67 21.64
Solyc03g013160.2.1 Tomato plasma membrane 21.55 21.6
Solyc03g063040.2.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 6.09 21.14
Solyc03g063030.2.1 Tomato plasma membrane 11.48 20.85
Solyc05g053970.2.1 Tomato plasma membrane 16.63 20.17
Solyc06g061270.1.1 Tomato cytosol, plasma membrane 9.37 19.05
Solyc09g098380.1.1 Tomato plasma membrane 19.2 18.55
Solyc03g078150.2.1 Tomato peroxisome 21.31 17.33
Solyc10g084830.1.1 Tomato cytosol, peroxisome, plasma membrane 21.31 17.2
Solyc11g008440.1.1 Tomato cytosol, nucleus, plasma membrane 22.25 17.12
Solyc03g013440.2.1 Tomato plasma membrane 13.82 17.05
Solyc03g063050.1.1 Tomato extracellular, plasma membrane 8.43 13.53
Protein Annotations
MapMan:24.2.3.4.4InterPro:AA_transpt_TMGO:GO:0003333GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0005774GO:GO:0006810
GO:GO:0008150GO:GO:0015171GO:GO:0016020GO:GO:0016021UniProt:K4D075PFAM:PF01490
PANTHER:PTHR22950PANTHER:PTHR22950:SF464EnsemblPlantsGene:Solyc10g048180.1EnsemblPlants:Solyc10g048180.1.1TMHMM:TMhelixUniParc:UPI0002769EF8
SEG:seg:::::
Description
No Description!
Coordinates
chr10:+:44437584..44438867
Molecular Weight (calculated)
46398.6 Da
IEP (calculated)
5.358
GRAVY (calculated)
0.726
Length
427 amino acids
Sequence
(BLAST)
001: MAFGEAVVGE SSTLLPKEEE EDETPLLENT KSCLPKTFAN FFIAIVGAGV LGLPYTFMKT GWITGICTLL AVALLTYHGM MLLIHTRRRL DLTLIGDSTI
101: SSFGDLGFAV CGPVGRFAVD VMIVLSQSGF CVGYLIFIGN TLSHLASLSK GFGIPLFSSA KSLYIWGCFP FQLGLTSIPS LTLLAPLSIF ADIAQIGAMG
201: VVMVEDVQTF MNQFPPGIEA FGTISTFYYG LGVALYSFEG VGMAIPLETE MKDKSKYGKV LALAMFFIAL MYGTFGVMGY FAYGSSTKDI VLSNMEKGLL
301: STSVKLGLCI NLFFTFPLML NPAFEVFERR FSTGNYCVWM RWVLVLAVTM VALLVPNFAD FMSLVGSSTC CALGFILPAL FHYQVFKGDM DKKGAFMDLG
401: LIVLGVFFGV TGTCYSLIEM FSQGKHV
Best Arabidopsis Sequence Match ( AT2G42005.1 )
(BLAST)
001: MGLEEQGRAR EDTPLLGKGR PLSSKFKTFA NVFIAIVGAG VLGLPYAFKR TGWLMGLLTL FSVAALINHC MMLLVHIRRK LGVSNIGSFG DLGFAACGNL
101: GRFVVDILII LSQAGFCVGY LIFIGNTLAN LSKPTKSTTL MSLRHLMGVS PKSLYIWGCF PFQLGLNSIK TLTHLAPLSI FADVVDLGAM AVVIVEDIKI
201: TVVQRPQVVA FGGMSVFFYG MGVAVYAFEG VGMVLPLESE TKDKDKFGKV LALSMLFIAV MYGSFGVLGY MAFGDDTMDI ITANLGAGVV SSLVQLGLCI
301: NLFFTFPLMM NPVFEIVERR FWSGMYCVWL RWLLVLAVTL VALLVPNFAD FLSLVGSSVC CALGFVLPSL FHLMVFKDEM EWKQRALDVG ILLLGVILGV
401: SGTWSSLTEI FQE
Arabidopsis Description
AVT3BAmino acid transporter AVT3B [Source:UniProtKB/Swiss-Prot;Acc:F4ILY9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.