Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc05g015640.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G65990.1 | Solyc05g015640.2.1 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400094217 | Potato | plasma membrane | 89.26 | 88.63 |
| Solyc02g082510.1.1 | Tomato | plasma membrane | 72.08 | 71.06 |
| Solyc03g032090.1.1 | Tomato | plasma membrane | 68.5 | 67.21 |
| VIT_07s0031g02140.t01 | Wine grape | plasma membrane | 64.68 | 64.22 |
| Bra029326.1-P | Field mustard | peroxisome | 56.32 | 55.14 |
| CDY42861 | Canola | peroxisome | 56.32 | 55.14 |
| AT5G65990.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 56.09 | 55.04 |
| GSMUA_Achr1P02810_001 | Banana | cytosol, plasma membrane, vacuole | 51.31 | 54.57 |
| GSMUA_Achr5P11060_001 | Banana | plasma membrane | 51.31 | 54.29 |
| CDY47026 | Canola | peroxisome, plastid | 55.85 | 54.29 |
| Os04t0565500-01 | Rice | cytosol, plasma membrane, plastid | 54.89 | 54.12 |
| KRH28932 | Soybean | cytosol, plasma membrane | 46.3 | 53.89 |
| TraesCS6A01G254100.1 | Wheat | plasma membrane | 53.46 | 53.21 |
| TraesCS6B01G271500.1 | Wheat | plasma membrane | 53.46 | 53.21 |
| KRH39423 | Soybean | plasma membrane | 54.18 | 53.04 |
| TraesCS6D01G235500.1 | Wheat | plasma membrane | 52.98 | 52.73 |
| HORVU6Hr1G064740.1 | Barley | plasma membrane | 52.74 | 52.49 |
| GSMUA_AchrUn_... | Banana | plasma membrane, plastid, vacuole | 52.27 | 52.39 |
| GSMUA_Achr4P25490_001 | Banana | plasma membrane | 48.93 | 52.3 |
| TraesCS2D01G400900.1 | Wheat | plasma membrane | 52.51 | 52.01 |
| TraesCS2B01G421800.1 | Wheat | plasma membrane | 52.51 | 52.01 |
| EES07473 | Sorghum | plasma membrane | 52.74 | 51.88 |
| Solyc10g048180.1.1 | Tomato | plasma membrane | 52.51 | 51.52 |
| TraesCS2A01G403800.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 51.79 | 51.3 |
| Zm00001d017557_P001 | Maize | plastid | 52.74 | 51.16 |
| OQU82139 | Sorghum | peroxisome | 51.31 | 50.12 |
| Os02t0670900-02 | Rice | endoplasmic reticulum, plasma membrane, plastid | 53.46 | 46.0 |
| EES12671 | Sorghum | plastid | 54.18 | 45.77 |
| Zm00001d026121_P001 | Maize | cytosol, peroxisome, plasma membrane, plastid | 53.22 | 45.05 |
| Solyc03g063040.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 7.16 | 24.39 |
| Solyc03g013160.2.1 | Tomato | plasma membrane | 22.43 | 22.07 |
| Solyc06g061260.1.1 | Tomato | plasma membrane | 9.31 | 20.21 |
| Solyc03g063030.2.1 | Tomato | plasma membrane | 11.22 | 20.0 |
| Solyc05g053970.2.1 | Tomato | plasma membrane | 16.47 | 19.6 |
| Solyc06g061270.1.1 | Tomato | cytosol, plasma membrane | 9.55 | 19.05 |
| Solyc05g050440.2.1 | Tomato | extracellular, plasma membrane, vacuole | 7.64 | 18.71 |
| Solyc09g098380.1.1 | Tomato | plasma membrane | 18.62 | 17.65 |
| Solyc10g084830.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 21.72 | 17.2 |
| Solyc03g078150.2.1 | Tomato | peroxisome | 21.24 | 16.95 |
| Solyc11g008440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 22.43 | 16.94 |
| Solyc03g013440.2.1 | Tomato | plasma membrane | 13.84 | 16.76 |
| Solyc03g063050.1.1 | Tomato | extracellular, plasma membrane | 10.02 | 15.79 |
Protein Annotations
| MapMan:24.2.3.4.4 | InterPro:AA_transpt_TM | GO:GO:0003333 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0015171 | GO:GO:0016020 | GO:GO:0016021 | UniProt:K4BAC2 | PFAM:PF01490 |
| PANTHER:PTHR22950 | PANTHER:PTHR22950:SF464 | EnsemblPlantsGene:Solyc02g082520.1 | EnsemblPlants:Solyc02g082520.1.1 | TMHMM:TMhelix | UniParc:UPI0002767F26 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2:+:46200905..46202164
Molecular Weight (calculated)
45889.8 Da
IEP (calculated)
4.997
GRAVY (calculated)
0.709
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFETDEASS STLKIPGEDV PFLGQNQQLS SPSKTSANIF MSLVGAGVLG LPYTFKKTGW LMGPLLIISI ATLSYYCMML LVYSRRKLES QFEGAKISSF
101: GDLGFAVCGP IGRLVVDVMI VLSQACFSVG YMIFIGNTLV YLFNSSVTEA NPRILGFSPK SVYIWSCFPF QLGLNSVPTL TLLAPLSIFA EIVDLGALGV
201: VMVEDVLIYL KNRPSLEMFG GFNVFFYGLG VAVFAFEGMG LVLPLESETR DKNKFGKILG LSVAFVAILY GAFGALGYFA SGEETKDIIT VIFNRDRLAA
301: WSLHKPLLGF PLMMNPVYEV MERRFCEGRY CLWLIWLMVL TVCFVSLTVP NFADFMSLVG SSVSVVLGFV LPAFFHLIVF KDELGWYSLA IDAAFIVMGT
401: TFAVYGTSSS LAKIISEMA
101: GDLGFAVCGP IGRLVVDVMI VLSQACFSVG YMIFIGNTLV YLFNSSVTEA NPRILGFSPK SVYIWSCFPF QLGLNSVPTL TLLAPLSIFA EIVDLGALGV
201: VMVEDVLIYL KNRPSLEMFG GFNVFFYGLG VAVFAFEGMG LVLPLESETR DKNKFGKILG LSVAFVAILY GAFGALGYFA SGEETKDIIT VIFNRDRLAA
301: WSLHKPLLGF PLMMNPVYEV MERRFCEGRY CLWLIWLMVL TVCFVSLTVP NFADFMSLVG SSVSVVLGFV LPAFFHLIVF KDELGWYSLA IDAAFIVMGT
401: TFAVYGTSSS LAKIISEMA
001: MGFQNEASSS SYTLKIPPPA REDSPLLGKG PPLSSQFKTF ANVFIAVVGA GVLGLPYAFK RTGWLMGVLL LVSVSVLTHH CMMLLVYTRR KLDSFNAGIS
101: KIGSFGDLGF AVCGSLGRIV VDLFIILSQA GFCVGYLIFI GTTLANLSDP ESPTSLRHQF TRLGSEFLGV SSKSLYIWGC FPFQLGLNSI KTLTHLAPLS
201: IFADIVDLGA MAVVIVEDSM IILKQRPDVV AFGGMSLFLY GMGVAVYSFE GVGMVLPLES EMKDKDKFGK VLALGMGFIS LIYIAFGILG YLAFGEDTMD
301: IITANLGAGL VSTVVQLGLC INLFFTFPLM MNPVFEIVER RFSRGMYSAW LRWVLVLAVT LVALFVPNFA DFLSLVGSST CCVLGFVLPA LFHLLVFKEE
401: MGWLQWSSDT AIVVLGVVLA VSGTWSSLSE IFSVKV
101: KIGSFGDLGF AVCGSLGRIV VDLFIILSQA GFCVGYLIFI GTTLANLSDP ESPTSLRHQF TRLGSEFLGV SSKSLYIWGC FPFQLGLNSI KTLTHLAPLS
201: IFADIVDLGA MAVVIVEDSM IILKQRPDVV AFGGMSLFLY GMGVAVYSFE GVGMVLPLES EMKDKDKFGK VLALGMGFIS LIYIAFGILG YLAFGEDTMD
301: IITANLGAGL VSTVVQLGLC INLFFTFPLM MNPVFEIVER RFSRGMYSAW LRWVLVLAVT LVALFVPNFA DFLSLVGSST CCVLGFVLPA LFHLLVFKEE
401: MGWLQWSSDT AIVVLGVVLA VSGTWSSLSE IFSVKV
Arabidopsis Description
AVT3CAmino acid transporter AVT3C [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.