Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- plasma membrane 5
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g03800.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G65990.1 | VIT_01s0010g03800.t01 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g082510.1.1 | Tomato | plasma membrane | 75.12 | 74.59 |
| PGSC0003DMT400086252 | Potato | plasma membrane | 74.88 | 74.35 |
| PGSC0003DMT400045065 | Potato | plasma membrane, plastid | 74.17 | 74.35 |
| Solyc03g032090.1.1 | Tomato | plasma membrane | 74.88 | 74.0 |
| PGSC0003DMT400048045 | Potato | plasma membrane | 74.88 | 74.0 |
| VIT_03s0038g03900.t01 | Wine grape | plasma membrane | 72.51 | 71.83 |
| PGSC0003DMT400094217 | Potato | plasma membrane | 69.43 | 69.43 |
| KRH28932 | Soybean | cytosol, plasma membrane | 57.35 | 67.22 |
| CDY42861 | Canola | peroxisome | 68.01 | 67.06 |
| Bra029326.1-P | Field mustard | peroxisome | 67.77 | 66.82 |
| CDY47026 | Canola | peroxisome, plastid | 67.54 | 66.13 |
| AT5G65990.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 66.82 | 66.04 |
| Solyc02g082520.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 64.22 | 64.68 |
| KRH39423 | Soybean | plasma membrane | 64.22 | 63.32 |
| Os04t0565500-01 | Rice | cytosol, plasma membrane, plastid | 63.74 | 63.29 |
| GSMUA_Achr1P02810_001 | Banana | cytosol, plasma membrane, vacuole | 59.0 | 63.2 |
| TraesCS2D01G400900.1 | Wheat | plasma membrane | 62.8 | 62.65 |
| TraesCS2B01G421800.1 | Wheat | plasma membrane | 62.8 | 62.65 |
| TraesCS2A01G403800.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 62.8 | 62.65 |
| GSMUA_Achr5P11060_001 | Banana | plasma membrane | 58.29 | 62.12 |
| TraesCS6B01G271500.1 | Wheat | plasma membrane | 61.14 | 61.28 |
| TraesCS6A01G254100.1 | Wheat | plasma membrane | 60.9 | 61.05 |
| TraesCS6D01G235500.1 | Wheat | plasma membrane | 60.66 | 60.81 |
| HORVU6Hr1G064740.1 | Barley | plasma membrane | 60.43 | 60.57 |
| GSMUA_AchrUn_... | Banana | plasma membrane, plastid, vacuole | 59.48 | 60.05 |
| Zm00001d017557_P001 | Maize | plastid | 61.37 | 59.95 |
| GSMUA_Achr4P25490_001 | Banana | plasma membrane | 55.69 | 59.95 |
| EES07473 | Sorghum | plasma membrane | 60.43 | 59.86 |
| OQU82139 | Sorghum | peroxisome | 59.95 | 58.97 |
| EES12671 | Sorghum | plastid | 63.74 | 54.23 |
| Zm00001d026121_P001 | Maize | cytosol, peroxisome, plasma membrane, plastid | 63.27 | 53.94 |
| Os02t0670900-02 | Rice | endoplasmic reticulum, plasma membrane, plastid | 62.09 | 53.8 |
| VIT_05s0062g01130.t01 | Wine grape | plasma membrane | 25.83 | 33.96 |
| VIT_19s0027g01860.t01 | Wine grape | plasma membrane, plastid | 22.27 | 23.27 |
| VIT_01s0026g02500.t01 | Wine grape | plasma membrane | 22.27 | 22.87 |
| VIT_19s0027g01870.t01 | Wine grape | plasma membrane, plastid | 20.62 | 21.38 |
| VIT_19s0027g01880.t01 | Wine grape | plasma membrane | 20.62 | 21.38 |
| VIT_14s0108g00620.t01 | Wine grape | plasma membrane | 21.56 | 21.26 |
| VIT_14s0108g00690.t01 | Wine grape | plasma membrane | 20.62 | 20.86 |
| VIT_14s0108g00630.t01 | Wine grape | plasma membrane | 21.09 | 20.79 |
| VIT_19s0027g01890.t01 | Wine grape | plasma membrane | 17.06 | 20.75 |
| VIT_06s0009g01140.t01 | Wine grape | plasma membrane | 19.67 | 19.71 |
| VIT_05s0062g01150.t01 | Wine grape | plasma membrane | 19.67 | 19.12 |
| VIT_13s0019g04660.t01 | Wine grape | cytosol, nucleus, plasma membrane | 24.41 | 18.29 |
| VIT_06s0061g00570.t01 | Wine grape | plasma membrane | 10.9 | 17.9 |
| VIT_08s0007g05210.t01 | Wine grape | plasma membrane | 21.56 | 17.6 |
Protein Annotations
| EntrezGene:100252511 | wikigene:100252511 | MapMan:24.2.3.4.4 | InterPro:AA_transpt_TM | ProteinID:CCB47141 | ProteinID:CCB47141.1 |
| UniProt:F6H4D0 | EMBL:FN595233 | GO:GO:0003333 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0015171 | GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100252511 | wikigene:LOC100252511 |
| PFAM:PF01490 | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF464 | TIGR:TC52842 | TMHMM:TMhelix | UniParc:UPI000198397C |
| ArrayExpress:VIT_07s0031g02140 | EnsemblPlantsGene:VIT_07s0031g02140 | EnsemblPlants:VIT_07s0031g02140.t01 | unigene:Vvi.7989 | RefSeq:XP_002277064 | RefSeq:XP_002277064.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr7:-:18295547..18297001
Molecular Weight (calculated)
45681.8 Da
IEP (calculated)
7.711
GRAVY (calculated)
0.774
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFEKEASSS SYGLDSVPRE DTPLLSKSRP LSSQTKTFAN VFIAIVGAGV LGLPYTFKRT GWVLGSLMLF AVAILTYHCM MLLVHTRRKL DSLHGFSKIA
101: SFGDLGFAVC GSIGRVAVDA MIVLSQAGFC ISYLIFIANT LAYVSNSSPS NPILGLTPKS FYIWGCFPFQ LGLNSIPTLT HLAPLSIFAD VVEIGAMGVV
201: MVEDVLIFLK QRPALRAFGG FSVFFYGLGV AVYAFEGIGM VLPLESEAKD KDKFGKVLAL SMAFISVMYG GFGALGYFAF GEETKDIITT NLGQGPLSIM
301: VQLGLCVNLF FTFPLMMNPV YEVMERRFRD GAYCLWLRWV AVLGVILVAL MVPNFADFLS LVGSSVCCVL AFVLPSLFHL IVFKDQLSRK GMALDVAILV
401: LGLVFGVSGT WSSLLEIVSP SA
101: SFGDLGFAVC GSIGRVAVDA MIVLSQAGFC ISYLIFIANT LAYVSNSSPS NPILGLTPKS FYIWGCFPFQ LGLNSIPTLT HLAPLSIFAD VVEIGAMGVV
201: MVEDVLIFLK QRPALRAFGG FSVFFYGLGV AVYAFEGIGM VLPLESEAKD KDKFGKVLAL SMAFISVMYG GFGALGYFAF GEETKDIITT NLGQGPLSIM
301: VQLGLCVNLF FTFPLMMNPV YEVMERRFRD GAYCLWLRWV AVLGVILVAL MVPNFADFLS LVGSSVCCVL AFVLPSLFHL IVFKDQLSRK GMALDVAILV
401: LGLVFGVSGT WSSLLEIVSP SA
001: MGLEEQGRAR EDTPLLGKGR PLSSKFKTFA NVFIAIVGAG VLGLPYAFKR TGWLMGLLTL FSVAALINHC MMLLVHIRRK LGVSNIGSFG DLGFAACGNL
101: GRFVVDILII LSQAGFCVGY LIFIGNTLAN LSKPTKSTTL MSLRHLMGVS PKSLYIWGCF PFQLGLNSIK TLTHLAPLSI FADVVDLGAM AVVIVEDIKI
201: TVVQRPQVVA FGGMSVFFYG MGVAVYAFEG VGMVLPLESE TKDKDKFGKV LALSMLFIAV MYGSFGVLGY MAFGDDTMDI ITANLGAGVV SSLVQLGLCI
301: NLFFTFPLMM NPVFEIVERR FWSGMYCVWL RWLLVLAVTL VALLVPNFAD FLSLVGSSVC CALGFVLPSL FHLMVFKDEM EWKQRALDVG ILLLGVILGV
401: SGTWSSLTEI FQE
101: GRFVVDILII LSQAGFCVGY LIFIGNTLAN LSKPTKSTTL MSLRHLMGVS PKSLYIWGCF PFQLGLNSIK TLTHLAPLSI FADVVDLGAM AVVIVEDIKI
201: TVVQRPQVVA FGGMSVFFYG MGVAVYAFEG VGMVLPLESE TKDKDKFGKV LALSMLFIAV MYGSFGVLGY MAFGDDTMDI ITANLGAGVV SSLVQLGLCI
301: NLFFTFPLMM NPVFEIVERR FWSGMYCVWL RWLLVLAVTL VALLVPNFAD FLSLVGSSVC CALGFVLPSL FHLMVFKDEM EWKQRALDVG ILLLGVILGV
401: SGTWSSLTEI FQE
Arabidopsis Description
AVT3BAmino acid transporter AVT3B [Source:UniProtKB/Swiss-Prot;Acc:F4ILY9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.