Factsheet for VIT_19s0027g01890.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 4
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	golgi, plasma membrane
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0027g01880.t01	Wine grape	plasma membrane	78.39	66.83
VIT_19s0027g01870.t01	Wine grape	plasma membrane, plastid	77.23	65.85
VIT_19s0027g01860.t01	Wine grape	plasma membrane, plastid	76.37	65.59
VIT_14s0108g00690.t01	Wine grape	plasma membrane	54.76	45.56
VIT_14s0108g00630.t01	Wine grape	plasma membrane	54.18	43.93
VIT_14s0108g00620.t01	Wine grape	plasma membrane	53.89	43.69
VIT_06s0061g00570.t01	Wine grape	plasma membrane	30.84	41.63
VIT_06s0009g01140.t01	Wine grape	plasma membrane	47.84	39.43
VIT_01s0026g02500.t01	Wine grape	plasma membrane	46.11	38.93
VIT_05s0062g01150.t01	Wine grape	plasma membrane	31.99	25.58
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	38.33	23.62
VIT_08s0007g05210.t01	Wine grape	plasma membrane	35.16	23.6
VIT_03s0038g03900.t01	Wine grape	plasma membrane	21.33	17.37
VIT_07s0031g02140.t01	Wine grape	plasma membrane	20.75	17.06
VIT_05s0062g01130.t01	Wine grape	plasma membrane	14.12	15.26

Protein Annotations

EntrezGene:100258085	wikigene:100258085	MapMan:24.2.3.4.7	InterPro:AA_transpt_TM	EMBL:AM471155	ProteinID:CAN75004
ProteinID:CAN75004.1	ProteinID:CCB47185	ProteinID:CCB47185.1	UniProt:F6H4P6	EMBL:FN595234	GO:GO:0003333
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015171
GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100258085	wikigene:LOC100258085	PFAM:PF01490	PANTHER:PTHR22950
PANTHER:PTHR22950:SF280	TMHMM:TMhelix	UniParc:UPI000210A369	ArrayExpress:VIT_19s0027g01890	EnsemblPlantsGene:VIT_19s0027g01890	EnsemblPlants:VIT_19s0027g01890.t01
unigene:Vvi.5370	RefSeq:XP_002265140	RefSeq:XP_002265140.1	:	:	:

Description

No Description!

Coordinates

chr19:-:22163198..22164434

Molecular Weight (calculated)

38261.0 Da

IEP (calculated)

7.954

GRAVY (calculated)

0.847

Length

347 amino acids

Sequence
(BLAST)

001: MTFYTGILLK RCMEADPSIR SYLDIAERAF GMKGRIIVMI IMNSELYLVA IGLLILEGDN LHKLFPKFMI KLGELTADGR QSFVLITALV IFPSMLLTDL
101: SILSYVSATG VFSCLIILVS IFCVGLFNGV GFHEKGTLLN VKSLPTGVSL YIVCFAGHPV IPSIYTSMRN TYQFSKVLLF SFVLTTFTYL AMAMVGYLMY
201: GDSVESQITL SLPTSKVCAE VAIYTTLLIP ITRYALMVTP VATAIEGGLS ENYKNQRTVR LLIRVGLLIS TVIVAYVFPY YESLMAIVGS IFVVSASFLL
301: PCLCYLRINS DLRWGWNCEQ MGIVGILVFG TLAGVLGTYS SVYDLVT

Best Arabidopsis Sequence Match ( AT3G28960.1 )
(BLAST)

001: MEEDNQEIQR DNVGSSSFFK TCFNALNALS GIGILSVPYS LARGGWLSLS LLLLLAVTAF YTSLLITKCM NADRNIKTYP DIGERAFGRP GRIIVSVFMH
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV

Arabidopsis Description

AVT1IAmino acid transporter AVT1I [Source:UniProtKB/Swiss-Prot;Acc:F4J1Q9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.