Factsheet for VIT_19s0027g01880.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 1
plasma membrane 4
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	golgi, plasma membrane
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0027g01870.t01	Wine grape	plasma membrane, plastid	97.79	97.79
VIT_19s0027g01890.t01	Wine grape	plasma membrane	66.83	78.39
VIT_19s0027g01860.t01	Wine grape	plasma membrane, plastid	74.94	75.5
VIT_14s0108g00690.t01	Wine grape	plasma membrane	52.09	50.84
VIT_14s0108g00620.t01	Wine grape	plasma membrane	52.09	49.53
VIT_14s0108g00630.t01	Wine grape	plasma membrane	52.09	49.53
VIT_06s0061g00570.t01	Wine grape	plasma membrane	30.71	48.64
VIT_01s0026g02500.t01	Wine grape	plasma membrane	45.21	44.77
VIT_06s0009g01140.t01	Wine grape	plasma membrane	45.7	44.18
VIT_05s0062g01150.t01	Wine grape	plasma membrane	30.96	29.03
VIT_08s0007g05210.t01	Wine grape	plasma membrane	35.14	27.66
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	37.1	26.82
VIT_03s0038g03900.t01	Wine grape	plasma membrane	22.36	21.36
VIT_07s0031g02140.t01	Wine grape	plasma membrane	21.38	20.62
VIT_05s0062g01130.t01	Wine grape	plasma membrane	14.5	18.38

Protein Annotations

EntrezGene:100252952	wikigene:100252952	MapMan:24.2.3.4.7	InterPro:AA_transpt_TM	ProteinID:CBI21676	ProteinID:CBI21676.3
UniProt:D7SWM7	EMBL:FN595234	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015171	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100252952
wikigene:LOC100252952	PFAM:PF01490	PANTHER:PTHR22950	PANTHER:PTHR22950:SF280	TIGR:TC55967	TMHMM:TMhelix
UniParc:UPI0001BE216D	ArrayExpress:VIT_19s0027g01880	EnsemblPlantsGene:VIT_19s0027g01880	EnsemblPlants:VIT_19s0027g01880.t01	RefSeq:XP_003634786	RefSeq:XP_003634786.1
RefSeq:XP_010644848.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr19:-:22155094..22157209

Molecular Weight (calculated)

44813.9 Da

IEP (calculated)

8.421

GRAVY (calculated)

0.815

Length

407 amino acids

Sequence
(BLAST)

001: MANNELRIPL ARTTGSSSFI NACFNGINAF LGISYLTVPY ALSTGGWLSL MPFSLVAIMT FYTGILLKRC MEAADHPSIT SYLDIAGHAF GTKGRITVMI
101: IMNLEMYLVA VGLLILEVDN LRKLFPEFMI NLGELTVDGR QSFAIITFLI ILPTIFLTDL SILSYISATG FFSCLVILVS IFCVGAFNGV GFHAKGSILL
201: NVDRLPITVS LYIVSFGGHP VIPPIYVSMR DRYQFSKVLL FSFVLATLTY MSMAIVGYLM YGDRVESEIT LNLPTSKVSA RIAIYTTLVI PIARYALVLT
301: PIATAIEGGI SENYKNKRAV RLFIRVALLF STAIVAYYFP YYESLMAIVG SIFVVSGSFL LPCLCYLKIS DLNWGWNCEQ IGIRGIILFG TFAGVLGTYS
401: SISELVR

Best Arabidopsis Sequence Match ( AT3G28960.1 )
(BLAST)

001: MEEDNQEIQR DNVGSSSFFK TCFNALNALS GIGILSVPYS LARGGWLSLS LLLLLAVTAF YTSLLITKCM NADRNIKTYP DIGERAFGRP GRIIVSVFMH
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV

Arabidopsis Description

AVT1IAmino acid transporter AVT1I [Source:UniProtKB/Swiss-Prot;Acc:F4J1Q9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.