Factsheet for VIT_05s0062g01150.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055694	Potato	extracellular, plasma membrane	61.06	71.82
Solyc09g098380.1.1	Tomato	plasma membrane	69.82	68.55
HORVU4Hr1G012350.1	Barley	endoplasmic reticulum, plasma membrane	61.75	67.0
GSMUA_Achr6P06880_001	Banana	mitochondrion, plasma membrane, plastid	70.97	65.12
KRH58803	Soybean	mitochondrion	68.2	64.35
AT5G16740.1	Thale cress	plasma membrane	61.52	62.68
KRG97383	Soybean	mitochondrion	67.51	62.08
TraesCS4A01G240700.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	63.59	61.06
KRH31531	Soybean	mitochondrion	62.67	60.18
Zm00001d004633_P001	Maize	plasma membrane	64.06	59.91
CDY38090	Canola	plasma membrane	59.22	59.35
TraesCS4D01G072600.1	Wheat	mitochondrion, plasma membrane	63.36	58.89
TraesCS4B01G074300.1	Wheat	plasma membrane	63.82	58.56
Os11t0298000-00	Rice	mitochondrion, plastid	64.29	57.76
Bra023581.1-P	Field mustard	plasma membrane	39.4	54.29
CDX85489	Canola	vacuole	44.7	44.91
VIT_01s0026g02500.t01	Wine grape	plasma membrane	31.57	33.33
VIT_19s0027g01890.t01	Wine grape	plasma membrane	25.58	31.99
VIT_14s0108g00690.t01	Wine grape	plasma membrane	30.65	31.89
VIT_19s0027g01860.t01	Wine grape	plasma membrane, plastid	29.26	31.44
VIT_19s0027g01880.t01	Wine grape	plasma membrane	29.03	30.96
VIT_19s0027g01870.t01	Wine grape	plasma membrane, plastid	28.8	30.71
VIT_14s0108g00630.t01	Wine grape	plasma membrane	30.18	30.61
VIT_14s0108g00620.t01	Wine grape	plasma membrane	29.26	29.67
VIT_06s0061g00570.t01	Wine grape	plasma membrane	17.28	29.18
VIT_06s0009g01140.t01	Wine grape	plasma membrane	27.42	28.27
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	34.79	26.82
VIT_08s0007g05210.t01	Wine grape	plasma membrane	31.34	26.31
VIT_07s0031g02140.t01	Wine grape	plasma membrane	19.12	19.67
VIT_03s0038g03900.t01	Wine grape	plasma membrane	18.2	18.54
VIT_05s0062g01130.t01	Wine grape	plasma membrane	13.13	17.76

Protein Annotations

EntrezGene:100260071	wikigene:100260071	MapMan:24.2.3.4.7	InterPro:AA_transpt_TM	ProteinID:CBI39446	ProteinID:CBI39446.3
UniProt:D7U9N2	EMBL:FN596745	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015171	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100260071
wikigene:LOC100260071	PFAM:PF01490	PANTHER:PTHR22950	PANTHER:PTHR22950:SF219	TMHMM:TMhelix	UniParc:UPI00015CC0F7
ArrayExpress:VIT_05s0062g01150	EnsemblPlantsGene:VIT_05s0062g01150	EnsemblPlants:VIT_05s0062g01150.t01	RefSeq:XP_002266204	RefSeq:XP_002266204.1	SEG:seg

Description

No Description!

Coordinates

chr5:+:19817318..19818964

Molecular Weight (calculated)

46936.5 Da

IEP (calculated)

8.915

GRAVY (calculated)

0.631

Length

434 amino acids

Sequence
(BLAST)

001: MSCDVCIEEN KVCGCQHSST EGFKGTVNDT DVERHQESNS SFAHAVINMI GMLIGLGQLS TPYALENGGW ASAFLLIGLG ITCAYGSHLL GKCLDKNPKS
101: RNYTDIGQQA FGTKGRVIAA IFIYMEIFMA LVSYTISLHD NLSTVFLGMH LKVPSLNLST SQLLTVMAVL VALPSLWLRD LSSISFLSSG GIFMSLLIFA
201: TVACTAISGA VKANQPIPVL KLDNIPAISG LYIFSYAGHI VFPDLYKAMK DPSKFTKVSI VSFTLVTMLY TTLAFMGAKL FGPDVNSQIT LSMPRHLTVT
301: KIALWATVLT PMTKYALEFA PFAIQLEHKL PQSMSSRMKM IIRGSVGSIL LLCILALALS VPYFEYVLSL TGSLVSVSIC IILPSTFYLK IYWAQVTKPL
401: LILNVILIAL GALLGVCGTI SSSKSLLKSI GRAH

Best Arabidopsis Sequence Match ( AT5G16740.1 )
(BLAST)

001: MVCVACVEEN KGCECEHEKP VRELVLEAAS ENSSFLHSVI NMVGMLIGLG QLSMPYAVES GGWMSIFLLI SFGILTTYTS HILGKCIRRN PKSKSYSDIG
101: YSAFGRHGRL IVCLFIYLEI FMALVSYTIS LHDNISAAFP ATFSNHGHFP AAKLTAVAVA IALPSLWIRD LSSISFLSSG GILMSAIIFG SVVYTAIFGG
201: VIDDGKIPVL RLENIPTVSG IYLFSFGGHI VFPNLYTSMK DPSKFTKVSI VSFATVTALY GALAITGAKM FGPSVNSQIT LSLPKHLVVT KIALWATVLT
301: PMTKYALEFA PLAIQLERSL PSTMTDRTKL VARGLMGSAL LLVILALALT VPYFGYVLSL TGSLVSVTIA VTLPSAFYLK ICWDGMTKFT RAANLGFVVL
401: GCVLGVLGSF ESSKLLVKEL VRVHGG

Arabidopsis Description

AVT1HAmino acid transporter AVT1H [Source:UniProtKB/Swiss-Prot;Acc:Q9LFE3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.