Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38090 | Canola | plasma membrane | 87.32 | 85.91 |
| Bra023581.1-P | Field mustard | plasma membrane | 61.97 | 83.81 |
| CDX85489 | Canola | vacuole | 67.84 | 66.9 |
| VIT_05s0062g01150.t01 | Wine grape | plasma membrane | 62.68 | 61.52 |
| HORVU4Hr1G012350.1 | Barley | endoplasmic reticulum, plasma membrane | 56.34 | 60.0 |
| PGSC0003DMT400055694 | Potato | extracellular, plasma membrane | 51.64 | 59.62 |
| Solyc09g098380.1.1 | Tomato | plasma membrane | 58.22 | 56.11 |
| TraesCS4A01G240700.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 58.22 | 54.87 |
| KRG97383 | Soybean | mitochondrion | 60.33 | 54.45 |
| Zm00001d004633_P001 | Maize | plasma membrane | 58.92 | 54.09 |
| GSMUA_Achr6P06880_001 | Banana | mitochondrion, plasma membrane, plastid | 59.86 | 53.91 |
| KRH58803 | Soybean | mitochondrion | 57.75 | 53.48 |
| TraesCS4D01G072600.1 | Wheat | mitochondrion, plasma membrane | 57.98 | 52.89 |
| KRH31531 | Soybean | mitochondrion | 55.87 | 52.65 |
| Os11t0298000-00 | Rice | mitochondrion, plastid | 58.92 | 51.97 |
| TraesCS4B01G074300.1 | Wheat | plasma membrane | 57.04 | 51.37 |
| AT3G28960.2 | Thale cress | plasma membrane | 29.58 | 31.11 |
| AT5G15240.1 | Thale cress | plasma membrane | 29.11 | 29.31 |
| AT5G02170.1 | Thale cress | plasma membrane | 34.51 | 27.95 |
| AT3G09340.1 | Thale cress | plasma membrane | 32.39 | 26.14 |
| AT3G09330.1 | Thale cress | cytosol, nucleus, plasma membrane | 31.69 | 25.76 |
| AT2G41190.1 | Thale cress | cytosol, peroxisome, plasma membrane | 31.22 | 24.81 |
| AT5G02180.1 | Thale cress | plasma membrane | 31.92 | 24.73 |
| AT2G39130.2 | Thale cress | cytosol, nucleus, plasma membrane | 31.46 | 24.36 |
| AT3G54830.1 | Thale cress | nucleus | 30.99 | 24.18 |
| AT4G38250.1 | Thale cress | plasma membrane | 23.24 | 22.71 |
| AT2G42005.1 | Thale cress | plasma membrane | 21.83 | 22.52 |
| AT3G11900.2 | Thale cress | plasma membrane | 20.19 | 19.91 |
| AT5G65990.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 19.48 | 19.44 |
Protein Annotations
| MapMan:24.2.3.4.7 | EntrezGene:831537 | InterPro:AA_transpt_TM | ProteinID:AED92332.1 | ArrayExpress:AT5G16740 | EnsemblPlantsGene:AT5G16740 |
| RefSeq:AT5G16740 | TAIR:AT5G16740 | RefSeq:AT5G16740-TAIR-G | EnsemblPlants:AT5G16740.1 | TAIR:AT5G16740.1 | Unigene:At.54871 |
| ProteinID:CAC01838.1 | GO:GO:0003333 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0006865 | GO:GO:0008150 | GO:GO:0015171 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_197176.1 |
| PFAM:PF01490 | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF219 | UniProt:Q9LFE3 | TMHMM:TMhelix | UniParc:UPI00000A18E2 |
| SEG:seg | : | : | : | : | : |
Description
AVT1HAmino acid transporter AVT1H [Source:UniProtKB/Swiss-Prot;Acc:Q9LFE3]
Coordinates
chr5:-:5501044..5502856
Molecular Weight (calculated)
45810.9 Da
IEP (calculated)
8.986
GRAVY (calculated)
0.697
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MVCVACVEEN KGCECEHEKP VRELVLEAAS ENSSFLHSVI NMVGMLIGLG QLSMPYAVES GGWMSIFLLI SFGILTTYTS HILGKCIRRN PKSKSYSDIG
101: YSAFGRHGRL IVCLFIYLEI FMALVSYTIS LHDNISAAFP ATFSNHGHFP AAKLTAVAVA IALPSLWIRD LSSISFLSSG GILMSAIIFG SVVYTAIFGG
201: VIDDGKIPVL RLENIPTVSG IYLFSFGGHI VFPNLYTSMK DPSKFTKVSI VSFATVTALY GALAITGAKM FGPSVNSQIT LSLPKHLVVT KIALWATVLT
301: PMTKYALEFA PLAIQLERSL PSTMTDRTKL VARGLMGSAL LLVILALALT VPYFGYVLSL TGSLVSVTIA VTLPSAFYLK ICWDGMTKFT RAANLGFVVL
401: GCVLGVLGSF ESSKLLVKEL VRVHGG
101: YSAFGRHGRL IVCLFIYLEI FMALVSYTIS LHDNISAAFP ATFSNHGHFP AAKLTAVAVA IALPSLWIRD LSSISFLSSG GILMSAIIFG SVVYTAIFGG
201: VIDDGKIPVL RLENIPTVSG IYLFSFGGHI VFPNLYTSMK DPSKFTKVSI VSFATVTALY GALAITGAKM FGPSVNSQIT LSLPKHLVVT KIALWATVLT
301: PMTKYALEFA PLAIQLERSL PSTMTDRTKL VARGLMGSAL LLVILALALT VPYFGYVLSL TGSLVSVTIA VTLPSAFYLK ICWDGMTKFT RAANLGFVVL
401: GCVLGVLGSF ESSKLLVKEL VRVHGG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.