Factsheet for AT2G39130.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005061.1-P	Field mustard	cytosol, nucleus, plasma membrane	76.91	91.76
CDY44630	Canola	plasma membrane	90.36	90.53
CDX74865	Canola	plasma membrane	90.18	89.86
CDX93284	Canola	cytosol, nucleus, plasma membrane	88.55	89.19
Bra017088.1-P	Field mustard	cytosol, nucleus, plasma membrane	88.18	88.83
CDY18351	Canola	plastid	82.18	88.8
Solyc03g063030.2.1	Tomato	plasma membrane	32.18	75.32
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	73.45	71.76
KRG91942	Soybean	plasma membrane	69.64	70.4
Solyc11g008440.1.1	Tomato	cytosol, nucleus, plasma membrane	68.91	68.29
KRG99573	Soybean	cytosol, nucleus, plasma membrane	13.27	68.22
AT3G54830.1	Thale cress	nucleus	67.45	67.95
KRH34828	Soybean	plasma membrane	69.09	67.74
PGSC0003DMT400036273	Potato	cytosol, nucleus, plasma membrane	53.45	66.22
Solyc03g063040.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	14.36	64.23
GSMUA_Achr1P03170_001	Banana	cytosol, nucleus, plasma membrane	64.73	63.23
GSMUA_Achr5P10650_001	Banana	cytosol, nucleus, plasma membrane	62.18	61.73
PGSC0003DMT400019190	Potato	cytosol, nucleus, plasma membrane	66.73	60.96
Zm00001d044994_P001	Maize	cytosol, plasma membrane, vacuole	15.82	56.86
TraesCS2A01G052500.1	Wheat	plasma membrane	56.73	56.32
TraesCS2B01G065200.1	Wheat	cytosol, peroxisome, plasma membrane	56.91	56.19
TraesCSU01G023100.1	Wheat	cytosol, peroxisome, plasma membrane	56.91	56.19
Os02t0101000-01	Rice	cytosol, nucleus, plasma membrane	57.82	55.69
Zm00001d004340_P002	Maize	plasma membrane	57.64	55.61
HORVU2Hr1G008090.4	Barley	cytosol, peroxisome, plasma membrane	56.73	55.52
Os04t0201800-00	Rice	plasma membrane, plastid	40.55	55.47
EES06091	Sorghum	plasma membrane	56.91	54.34
Zm00001d048577_P001	Maize	cytosol, nucleus, plasma membrane	55.82	54.14
TraesCS6B01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	55.27	54.0
TraesCS6A01G002400.1	Wheat	cytosol, nucleus, plasma membrane	55.45	53.89
TraesCS6D01G003200.1	Wheat	cytosol, nucleus, plasma membrane	55.45	53.51
EER89806	Sorghum	cytosol, nucleus, plasma membrane	54.36	52.36
HORVU6Hr1G001480.1	Barley	plasma membrane	55.45	51.35
KRH38592	Soybean	endoplasmic reticulum	22.0	50.63
Zm00001d043640_P001	Maize	plasma membrane	15.45	50.3
Solyc03g063050.1.1	Tomato	extracellular, plasma membrane	24.18	50.0
AT5G02170.1	Thale cress	plasma membrane	47.45	49.62
AT3G09330.1	Thale cress	cytosol, nucleus, plasma membrane	46.36	48.66
AT3G09340.1	Thale cress	plasma membrane	46.36	48.3
KXG25873	Sorghum	plasma membrane	57.27	47.87
Zm00001d037057_P001	Maize	cytosol, nucleus, plasma membrane	45.45	47.53
AT5G02180.1	Thale cress	plasma membrane	46.91	46.91
AT2G41190.1	Thale cress	cytosol, peroxisome, plasma membrane	41.82	42.91
AT3G28960.2	Thale cress	plasma membrane	27.64	37.53
AT5G15240.1	Thale cress	plasma membrane	28.73	37.35
AT5G16740.1	Thale cress	plasma membrane	24.36	31.46
AT2G42005.1	Thale cress	plasma membrane	18.91	25.18
AT4G38250.1	Thale cress	plasma membrane	19.82	25.0
AT3G11900.2	Thale cress	plasma membrane	18.73	23.84
AT5G65990.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane, plastid	18.36	23.65

Protein Annotations

MapMan:24.2.3.4.7	EntrezGene:818499	UniProt:A0A178VZ77	ProteinID:AAC79623.3	ProteinID:AAM14997.1	InterPro:AA_transpt_TM
ProteinID:AEC09638.1	ProteinID:ANM62501.1	ArrayExpress:AT2G39130	EnsemblPlantsGene:AT2G39130	RefSeq:AT2G39130	TAIR:AT2G39130
RefSeq:AT2G39130-TAIR-G	EnsemblPlants:AT2G39130.2	EMBL:AY050801	Unigene:At.13254	UniProt:F4IUW3	GO:GO:0003333
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005774	GO:GO:0006810	GO:GO:0006865	GO:GO:0008150	GO:GO:0015171
GO:GO:0016020	GO:GO:0016021	RefSeq:NP_001324655.1	RefSeq:NP_850312.1	ProteinID:OAP11156.1	PFAM:PF01490
PANTHER:PTHR22950	PANTHER:PTHR22950:SF240	TMHMM:TMhelix	UniParc:UPI00001623ED	SEG:seg	:

Description

AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]

Coordinates

chr2:-:16323171..16327306

Molecular Weight (calculated)

60073.0 Da

IEP (calculated)

5.577

GRAVY (calculated)

0.350

Length

550 amino acids

Sequence
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.