CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91942	Soybean	plasma membrane	92.16	95.04
KRG99573	Soybean	cytosol, nucleus, plasma membrane	17.65	92.52
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	73.97	73.71
Bra007103.1-P	Field mustard	plasma membrane	50.27	71.57
CDY18351	Canola	plastid	63.64	70.14
Solyc03g063030.2.1	Tomato	plasma membrane	29.23	69.79
AT2G39130.2	Thale cress	cytosol, nucleus, plasma membrane	67.74	69.09
CDX93284	Canola	cytosol, nucleus, plasma membrane	67.2	69.05
Solyc11g008440.1.1	Tomato	cytosol, nucleus, plasma membrane	68.27	69.01
KRH33248	Soybean	cytosol, nucleus, plasma membrane	66.67	69.0
Bra017088.1-P	Field mustard	cytosol, nucleus, plasma membrane	67.02	68.86
CDY44630	Canola	plasma membrane	67.38	68.85
CDX74865	Canola	plasma membrane	67.38	68.48
KRH71649	Soybean	cytosol, nucleus, plasma membrane	66.13	68.45
CDX78269	Canola	plasma membrane	63.99	67.74
Bra005061.1-P	Field mustard	cytosol, nucleus, plasma membrane	55.44	67.46
CDX73443	Canola	cytosol, nucleus, plasma membrane	63.46	66.29
PGSC0003DMT400036273	Potato	cytosol, nucleus, plasma membrane	52.41	66.22
Solyc03g063040.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	14.44	65.85
PGSC0003DMT400019190	Potato	cytosol, nucleus, plasma membrane	66.67	62.13
AT3G54830.1	Thale cress	nucleus	57.93	59.52
KRH38592	Soybean	endoplasmic reticulum	23.17	54.39
Solyc03g063050.1.1	Tomato	extracellular, plasma membrane	22.82	48.12
KRH16006	Soybean	cytosol	26.2	43.11
KRH30199	Soybean	extracellular, plasma membrane	28.16	42.36
KRH40411	Soybean	plasma membrane	20.14	42.01
KRH40095	Soybean	plasma membrane	31.55	41.55
KRH01177	Soybean	plasma membrane	30.84	40.33
KRH40094	Soybean	plasma membrane	30.66	40.28
KRG89633	Soybean	plasma membrane	28.34	39.07
KRH33027	Soybean	plasma membrane	40.46	38.94
KRG95106	Soybean	cytosol, peroxisome, plasma membrane	31.91	38.91
KRG98240	Soybean	plasma membrane	29.95	38.44
KRH30194	Soybean	plasma membrane	29.77	38.22
KRH71933	Soybean	cytosol, peroxisome, plasma membrane	30.3	38.12
KRG98784	Soybean	plasma membrane	24.42	37.23
KRH66774	Soybean	plasma membrane	17.47	36.7
KRH77523	Soybean	cytosol, nucleus, plasma membrane	30.3	35.94
KRH27948	Soybean	plasma membrane	11.05	35.84
KRH75803	Soybean	mitochondrion	19.61	35.14
KRG99991	Soybean	cytosol, nucleus, peroxisome	17.29	34.04
KRH58803	Soybean	mitochondrion	26.74	32.61
KRG97383	Soybean	mitochondrion	26.38	31.36
KRH31531	Soybean	mitochondrion	24.96	30.97
KRG96325	Soybean	plasma membrane	18.0	23.93
KRH68062	Soybean	plasma membrane	17.47	23.33
KRH28932	Soybean	cytosol, plasma membrane	13.55	21.11
KRH39423	Soybean	plasma membrane	16.04	21.03

Protein Annotations

EntrezGene:100810530	MapMan:24.2.3.4.7	InterPro:AA_transpt_TM	EMBL:ACUP02006638	EnsemblPlantsGene:GLYMA_10G208800	GO:GO:0003333
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015171
GO:GO:0016020	GO:GO:0016021	UniProt:I1LCY5	EnsemblPlants:KRH34828	ProteinID:KRH34828	ProteinID:KRH34828.1
PFAM:PF01490	PANTHER:PTHR22950	PANTHER:PTHR22950:SF240	TMHMM:TMhelix	UniParc:UPI0002953BF7	SEG:seg

Description

hypothetical protein

Coordinates

chr10:+:44089723..44097958

Molecular Weight (calculated)

61025.2 Da

IEP (calculated)

7.144

GRAVY (calculated)

0.324

Length

561 amino acids

Sequence
(BLAST)

001: MNNSVSENSF IIESDEEDEE KDLNKGEGGG NDSDSSNYSN ENPPQRKPSS YNISWPQSYR QSIDLYSSVP SPNIGFLGTP SLSRLSSSFL STSLTRRHTP
101: EALPSLTKPL IQQDTEDEQH QRRSSHTLLP PLPSRRSSLI KKDSKVAHLE VPSRHCSFGQ AMLNGINVLC GVGILSTPYA AKVGGWLGLS ILVIFAIISF
201: YTGLLLRSCL DSEPELETYP DIGQAAFGTT GRIAISACCI EYIILEGDNL SSLFPSAHLN LGGIELNSRT LFAVITTLAV LPTVWLRDLS ILSYISAGGV
301: VASILVVLCL LWVGIEDVGF HSKGTTLNLS TLPVAVGLYG YCYSGHAVFP NIYTSMANPN QFPGVLLACF GICTLLYAGA AVMGYTMFGE AILSQFTLNM
401: PKELVATNIA VWTTVVNPFT KYPLYVPYRK LNKKFCCKQN IFNITYALTI SPVAMSLEEL IPSNHAKSYL YSIFIRTGLV LSTLFIGLSV PFFGLVMSLI
501: GSLLTMLVTL ILPCACFLRI LRGKVTRIQA ALCITIITVG VVCSAFGTYS ALSEIVKSLR E

Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN

Arabidopsis Description

AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.