CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99573	Soybean	cytosol, nucleus, plasma membrane	19.12	97.2
KRH34828	Soybean	plasma membrane	95.04	92.16
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	77.39	74.78
Bra007103.1-P	Field mustard	plasma membrane	52.76	72.84
Solyc03g063030.2.1	Tomato	plasma membrane	31.43	72.77
CDY18351	Canola	plastid	66.36	70.92
KRH33248	Soybean	cytosol, nucleus, plasma membrane	70.22	70.48
KRH71649	Soybean	cytosol, nucleus, plasma membrane	69.85	70.11
CDY44630	Canola	plasma membrane	70.4	69.76
AT2G39130.2	Thale cress	cytosol, nucleus, plasma membrane	70.4	69.64
CDX93284	Canola	cytosol, nucleus, plasma membrane	69.67	69.41
CDX74865	Canola	plasma membrane	70.4	69.38
Bra017088.1-P	Field mustard	cytosol, nucleus, plasma membrane	69.49	69.23
Solyc11g008440.1.1	Tomato	cytosol, nucleus, plasma membrane	70.22	68.83
Bra005061.1-P	Field mustard	cytosol, nucleus, plasma membrane	58.09	68.55
CDX78269	Canola	plasma membrane	66.73	68.49
PGSC0003DMT400036273	Potato	cytosol, nucleus, plasma membrane	54.78	67.12
CDX73443	Canola	cytosol, nucleus, plasma membrane	66.18	67.04
Solyc03g063040.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	14.89	65.85
PGSC0003DMT400019190	Potato	cytosol, nucleus, plasma membrane	68.57	61.96
AT3G54830.1	Thale cress	nucleus	60.66	60.44
KRH38592	Soybean	endoplasmic reticulum	24.82	56.49
Solyc03g063050.1.1	Tomato	extracellular, plasma membrane	22.98	46.99
KRH40411	Soybean	plasma membrane	21.51	43.49
KRH30199	Soybean	extracellular, plasma membrane	29.41	42.9
KRH16006	Soybean	cytosol	26.84	42.82
KRH40095	Soybean	plasma membrane	33.27	42.49
KRH01177	Soybean	plasma membrane	32.72	41.49
KRH40094	Soybean	plasma membrane	32.35	41.22
KRG95106	Soybean	cytosol, peroxisome, plasma membrane	34.01	40.22
KRH33027	Soybean	plasma membrane	42.83	39.97
KRG89633	Soybean	plasma membrane	29.78	39.8
KRH71933	Soybean	cytosol, peroxisome, plasma membrane	32.54	39.69
KRH27948	Soybean	plasma membrane	12.5	39.31
KRH30194	Soybean	plasma membrane	31.07	38.67
KRG98240	Soybean	plasma membrane	31.07	38.67
KRG98784	Soybean	plasma membrane	25.92	38.32
KRH77523	Soybean	cytosol, nucleus, plasma membrane	32.35	37.21
KRH66774	Soybean	plasma membrane	17.83	36.33
KRH75803	Soybean	mitochondrion	20.77	36.1
KRG99991	Soybean	cytosol, nucleus, peroxisome	17.65	33.68
KRH58803	Soybean	mitochondrion	27.39	32.39
KRG97383	Soybean	mitochondrion	27.21	31.36
KRH31531	Soybean	mitochondrion	25.37	30.53
KRG96325	Soybean	plasma membrane	18.75	24.17
KRH68062	Soybean	plasma membrane	18.38	23.81
KRH28932	Soybean	cytosol, plasma membrane	13.97	21.11
KRH39423	Soybean	plasma membrane	16.36	20.79

Protein Annotations

EntrezGene:100775840	MapMan:24.2.3.4.7	InterPro:AA_transpt_TM	EMBL:ACUP02012716	EnsemblPlantsGene:GLYMA_20G181900	GO:GO:0003333
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015171
GO:GO:0016020	GO:GO:0016021	UniProt:I1NHH8	EnsemblPlants:KRG91942	ProteinID:KRG91942	ProteinID:KRG91942.1
ProteinID:KRG91943.1	PFAM:PF01490	PANTHER:PTHR22950	PANTHER:PTHR22950:SF240	TMHMM:TMhelix	UniParc:UPI000233DA6A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:41972931..41980524

Molecular Weight (calculated)

58647.3 Da

IEP (calculated)

6.280

GRAVY (calculated)

0.410

Length

544 amino acids

Sequence
(BLAST)

001: MNNSVSENSF IIESDEEDEE KDLNKGGVDG NDSDSSNYSN ENPPQRKPSS YNISWPQSYR QSIDLYSSVP SPNIGYLGTP SLSRLSSSFL STSLTRRHTP
101: EALPSVAKPL IQDTEDEQHQ RRSSHTLLPP LPSRRSSLIK KDSKVIHHEV PSGHCSFGQA VLNGINVLCG VGILSTPYAA KVGGWLGLSI LVIFAIISFY
201: TGLLLRSCLD SEPELETYPD IGQAAFGTTG RIAISIVLYV ELYACCIEYI ILEGDNLSSL FPSAHLNLGG IELNSHTLFA VITTLAVLPT VWLRDLSILS
301: YISAGGVVAS ILVVLCLLWV GIEDVGFHSK GTTLNLATLP VAVGLYGYCY SGHAVFPNIY TSMANPNQFP GVLLACFGIC TLLYAGAAVL GYTMFGEAIL
401: SQFTLNMPKE LVATKIAVWT TVVNPFTKYA LTISPVAMSL EELIPSNHAK SYLYSIFIRT GLVLSTLVIG LSVPFFGLVM SLIGSLLTML VTLILPCACF
501: LRILRGKVTR TQAALCITII TVGVVCSAFG SYSALAEIVK SLRG

Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN

Arabidopsis Description

AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.