Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra007103.1-P | Field mustard | plasma membrane | 58.79 | 81.47 |
CDX78269 | Canola | plasma membrane | 76.19 | 78.49 |
CDX73443 | Canola | cytosol, nucleus, plasma membrane | 76.19 | 77.47 |
Solyc03g063030.2.1 | Tomato | plasma membrane | 31.14 | 72.34 |
AT2G39130.2 | Thale cress | cytosol, nucleus, plasma membrane | 67.95 | 67.45 |
PGSC0003DMT400036273 | Potato | cytosol, nucleus, plasma membrane | 50.37 | 61.94 |
VIT_13s0019g04660.t01 | Wine grape | cytosol, nucleus, plasma membrane | 63.55 | 61.63 |
KRG91942 | Soybean | plasma membrane | 60.44 | 60.66 |
Solyc11g008440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 60.44 | 59.46 |
KRH34828 | Soybean | plasma membrane | 59.52 | 57.93 |
PGSC0003DMT400019190 | Potato | cytosol, nucleus, plasma membrane | 60.99 | 55.32 |
GSMUA_Achr1P03170_001 | Banana | cytosol, nucleus, plasma membrane | 56.41 | 54.71 |
GSMUA_Achr5P10650_001 | Banana | cytosol, nucleus, plasma membrane | 54.4 | 53.61 |
Os04t0201800-00 | Rice | plasma membrane, plastid | 38.64 | 52.49 |
Zm00001d004340_P002 | Maize | plasma membrane | 51.65 | 49.47 |
TraesCSU01G023100.1 | Wheat | cytosol, peroxisome, plasma membrane | 50.0 | 49.01 |
EES06091 | Sorghum | plasma membrane | 51.65 | 48.96 |
TraesCS2A01G052500.1 | Wheat | plasma membrane | 49.63 | 48.92 |
Os02t0101000-01 | Rice | cytosol, nucleus, plasma membrane | 50.92 | 48.69 |
TraesCS2B01G065200.1 | Wheat | cytosol, peroxisome, plasma membrane | 49.63 | 48.65 |
KRH38592 | Soybean | endoplasmic reticulum | 21.25 | 48.54 |
Zm00001d048577_P001 | Maize | cytosol, nucleus, plasma membrane | 50.37 | 48.5 |
Solyc03g063050.1.1 | Tomato | extracellular, plasma membrane | 23.63 | 48.5 |
HORVU2Hr1G008090.4 | Barley | cytosol, peroxisome, plasma membrane | 49.63 | 48.22 |
TraesCS6B01G007400.1 | Wheat | cytosol, peroxisome, plasma membrane | 49.27 | 47.78 |
TraesCS6A01G002400.1 | Wheat | cytosol, nucleus, plasma membrane | 49.45 | 47.7 |
TraesCS6D01G003200.1 | Wheat | cytosol, nucleus, plasma membrane | 49.27 | 47.19 |
EER89806 | Sorghum | cytosol, nucleus, plasma membrane | 48.72 | 46.58 |
Zm00001d044994_P001 | Maize | cytosol, plasma membrane, vacuole | 12.82 | 45.75 |
Zm00001d037057_P001 | Maize | cytosol, nucleus, plasma membrane | 43.77 | 45.44 |
HORVU6Hr1G001480.1 | Barley | plasma membrane | 49.08 | 45.12 |
AT5G02170.1 | Thale cress | plasma membrane | 43.04 | 44.68 |
AT3G09330.1 | Thale cress | cytosol, nucleus, plasma membrane | 42.12 | 43.89 |
AT3G09340.1 | Thale cress | plasma membrane | 42.12 | 43.56 |
KXG25873 | Sorghum | plasma membrane | 52.01 | 43.16 |
AT5G02180.1 | Thale cress | plasma membrane | 43.41 | 43.09 |
Solyc03g063040.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 9.71 | 43.09 |
KRG99573 | Soybean | cytosol, nucleus, plasma membrane | 8.24 | 42.06 |
Zm00001d043640_P001 | Maize | plasma membrane | 12.09 | 39.05 |
AT2G41190.1 | Thale cress | cytosol, peroxisome, plasma membrane | 38.28 | 38.99 |
AT5G15240.1 | Thale cress | plasma membrane | 27.66 | 35.7 |
AT3G28960.2 | Thale cress | plasma membrane | 25.27 | 34.07 |
AT5G16740.1 | Thale cress | plasma membrane | 24.18 | 30.99 |
AT2G42005.1 | Thale cress | plasma membrane | 16.85 | 22.28 |
AT4G38250.1 | Thale cress | plasma membrane | 17.77 | 22.25 |
AT3G11900.2 | Thale cress | plasma membrane | 17.58 | 22.22 |
AT5G65990.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 16.12 | 20.61 |
Protein Annotations
MapMan:24.2.3.4.7 | InterPro:AA_transpt_TM | ArrayExpress:AT3G54830 | EnsemblPlantsGene:AT3G54830 | RefSeq:AT3G54830 | TAIR:AT3G54830 |
RefSeq:AT3G54830-TAIR-G | EnsemblPlants:AT3G54830.1 | TAIR:AT3G54830.1 | Unigene:At.35076 | GO:GO:0003333 | GO:GO:0003674 |
GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006865 | GO:GO:0008150 | GO:GO:0015171 |
GO:GO:0016020 | GO:GO:0016021 | PFAM:PF01490 | PO:PO:0000293 | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF240 |
TMHMM:TMhelix | UniParc:UPI000034F005 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3:-:20311901..20315164
Molecular Weight (calculated)
59739.6 Da
IEP (calculated)
5.479
GRAVY (calculated)
0.205
Length
546 amino acids
Sequence
(BLAST)
(BLAST)
001: MNHSTSDQSL YIESDDGDDE RKHLSDDEDD DGTLSDTSDA YNQNQHHLSK ASPYSTAWPK SYRQSIDMFG SVPSPNLGFL ANSSMSRRGS SFMSSTLTRR
101: HTPESLPCVT KPLLEDEEAP KHKLSTHSLL PSKPSSSMVV SHDMGISNDS SFGQAVLNGV NVLCGVGILS TPYAVKEGGW LGLIILFAFG ILCFYTGLLL
201: RYCLDSHPDV QTYPDIGHAA FGSTGRILVS VILYMELYAM SVEYIILEGD NLSSMFPNAS LSIGGFHLDA PRLFALLTTL AVLPTVWLRD LSVLSYISAG
301: GVIASVLVVL CLFWVGLVDD VGIHSKGTPL NLATLPVSVG LYGYCYSGHG VFPNIYTSMA KPSQFSAVLL ASFGICTLMY AGVAVMGYSM FGESTESQFT
401: LNLPQDLVAS KIALWTTVVN PFTKYPLSRN IQRLFIYLFA MSLEELIPSN YGKSRFYAIA IRSALAISTL LVGLAIPFFG LVMSLIGSFL TMLIFLDTDA
501: DTTASLFLEH LKEKSNPYSG DNLYLNYDSR SSMFSHWHIF SPCKDH
101: HTPESLPCVT KPLLEDEEAP KHKLSTHSLL PSKPSSSMVV SHDMGISNDS SFGQAVLNGV NVLCGVGILS TPYAVKEGGW LGLIILFAFG ILCFYTGLLL
201: RYCLDSHPDV QTYPDIGHAA FGSTGRILVS VILYMELYAM SVEYIILEGD NLSSMFPNAS LSIGGFHLDA PRLFALLTTL AVLPTVWLRD LSVLSYISAG
301: GVIASVLVVL CLFWVGLVDD VGIHSKGTPL NLATLPVSVG LYGYCYSGHG VFPNIYTSMA KPSQFSAVLL ASFGICTLMY AGVAVMGYSM FGESTESQFT
401: LNLPQDLVAS KIALWTTVVN PFTKYPLSRN IQRLFIYLFA MSLEELIPSN YGKSRFYAIA IRSALAISTL LVGLAIPFFG LVMSLIGSFL TMLIFLDTDA
501: DTTASLFLEH LKEKSNPYSG DNLYLNYDSR SSMFSHWHIF SPCKDH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.