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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • plasma membrane 1
  • golgi 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra007103.1-P Field mustard plasma membrane 58.79 81.47
CDX78269 Canola plasma membrane 76.19 78.49
CDX73443 Canola cytosol, nucleus, plasma membrane 76.19 77.47
Solyc03g063030.2.1 Tomato plasma membrane 31.14 72.34
AT2G39130.2 Thale cress cytosol, nucleus, plasma membrane 67.95 67.45
PGSC0003DMT400036273 Potato cytosol, nucleus, plasma membrane 50.37 61.94
VIT_13s0019g04660.t01 Wine grape cytosol, nucleus, plasma membrane 63.55 61.63
KRG91942 Soybean plasma membrane 60.44 60.66
Solyc11g008440.1.1 Tomato cytosol, nucleus, plasma membrane 60.44 59.46
KRH34828 Soybean plasma membrane 59.52 57.93
PGSC0003DMT400019190 Potato cytosol, nucleus, plasma membrane 60.99 55.32
GSMUA_Achr1P03170_001 Banana cytosol, nucleus, plasma membrane 56.41 54.71
GSMUA_Achr5P10650_001 Banana cytosol, nucleus, plasma membrane 54.4 53.61
Os04t0201800-00 Rice plasma membrane, plastid 38.64 52.49
Zm00001d004340_P002 Maize plasma membrane 51.65 49.47
TraesCSU01G023100.1 Wheat cytosol, peroxisome, plasma membrane 50.0 49.01
EES06091 Sorghum plasma membrane 51.65 48.96
TraesCS2A01G052500.1 Wheat plasma membrane 49.63 48.92
Os02t0101000-01 Rice cytosol, nucleus, plasma membrane 50.92 48.69
TraesCS2B01G065200.1 Wheat cytosol, peroxisome, plasma membrane 49.63 48.65
KRH38592 Soybean endoplasmic reticulum 21.25 48.54
Zm00001d048577_P001 Maize cytosol, nucleus, plasma membrane 50.37 48.5
Solyc03g063050.1.1 Tomato extracellular, plasma membrane 23.63 48.5
HORVU2Hr1G008090.4 Barley cytosol, peroxisome, plasma membrane 49.63 48.22
TraesCS6B01G007400.1 Wheat cytosol, peroxisome, plasma membrane 49.27 47.78
TraesCS6A01G002400.1 Wheat cytosol, nucleus, plasma membrane 49.45 47.7
TraesCS6D01G003200.1 Wheat cytosol, nucleus, plasma membrane 49.27 47.19
EER89806 Sorghum cytosol, nucleus, plasma membrane 48.72 46.58
Zm00001d044994_P001 Maize cytosol, plasma membrane, vacuole 12.82 45.75
Zm00001d037057_P001 Maize cytosol, nucleus, plasma membrane 43.77 45.44
HORVU6Hr1G001480.1 Barley plasma membrane 49.08 45.12
AT5G02170.1 Thale cress plasma membrane 43.04 44.68
AT3G09330.1 Thale cress cytosol, nucleus, plasma membrane 42.12 43.89
AT3G09340.1 Thale cress plasma membrane 42.12 43.56
KXG25873 Sorghum plasma membrane 52.01 43.16
AT5G02180.1 Thale cress plasma membrane 43.41 43.09
Solyc03g063040.2.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 9.71 43.09
KRG99573 Soybean cytosol, nucleus, plasma membrane 8.24 42.06
Zm00001d043640_P001 Maize plasma membrane 12.09 39.05
AT2G41190.1 Thale cress cytosol, peroxisome, plasma membrane 38.28 38.99
AT5G15240.1 Thale cress plasma membrane 27.66 35.7
AT3G28960.2 Thale cress plasma membrane 25.27 34.07
AT5G16740.1 Thale cress plasma membrane 24.18 30.99
AT2G42005.1 Thale cress plasma membrane 16.85 22.28
AT4G38250.1 Thale cress plasma membrane 17.77 22.25
AT3G11900.2 Thale cress plasma membrane 17.58 22.22
AT5G65990.1 Thale cress endoplasmic reticulum, peroxisome, plasma membrane, plastid 16.12 20.61
Protein Annotations
MapMan:24.2.3.4.7InterPro:AA_transpt_TMArrayExpress:AT3G54830EnsemblPlantsGene:AT3G54830RefSeq:AT3G54830TAIR:AT3G54830
RefSeq:AT3G54830-TAIR-GEnsemblPlants:AT3G54830.1TAIR:AT3G54830.1Unigene:At.35076GO:GO:0003333GO:GO:0003674
GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0006865GO:GO:0008150GO:GO:0015171
GO:GO:0016020GO:GO:0016021PFAM:PF01490PO:PO:0000293PANTHER:PTHR22950PANTHER:PTHR22950:SF240
TMHMM:TMhelixUniParc:UPI000034F005SEG:seg:::
Description
No Description!
Coordinates
chr3:-:20311901..20315164
Molecular Weight (calculated)
59739.6 Da
IEP (calculated)
5.479
GRAVY (calculated)
0.205
Length
546 amino acids
Sequence
(BLAST)
001: MNHSTSDQSL YIESDDGDDE RKHLSDDEDD DGTLSDTSDA YNQNQHHLSK ASPYSTAWPK SYRQSIDMFG SVPSPNLGFL ANSSMSRRGS SFMSSTLTRR
101: HTPESLPCVT KPLLEDEEAP KHKLSTHSLL PSKPSSSMVV SHDMGISNDS SFGQAVLNGV NVLCGVGILS TPYAVKEGGW LGLIILFAFG ILCFYTGLLL
201: RYCLDSHPDV QTYPDIGHAA FGSTGRILVS VILYMELYAM SVEYIILEGD NLSSMFPNAS LSIGGFHLDA PRLFALLTTL AVLPTVWLRD LSVLSYISAG
301: GVIASVLVVL CLFWVGLVDD VGIHSKGTPL NLATLPVSVG LYGYCYSGHG VFPNIYTSMA KPSQFSAVLL ASFGICTLMY AGVAVMGYSM FGESTESQFT
401: LNLPQDLVAS KIALWTTVVN PFTKYPLSRN IQRLFIYLFA MSLEELIPSN YGKSRFYAIA IRSALAISTL LVGLAIPFFG LVMSLIGSFL TMLIFLDTDA
501: DTTASLFLEH LKEKSNPYSG DNLYLNYDSR SSMFSHWHIF SPCKDH
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.