Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G09340.1 | Thale cress | plasma membrane | 93.32 | 92.61 |
| Bra001315.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 82.25 | 81.63 |
| CDY07919 | Canola | cytosol, nucleus, plasma membrane | 81.49 | 80.87 |
| AT5G02170.1 | Thale cress | plasma membrane | 67.37 | 67.11 |
| AT5G02180.1 | Thale cress | plasma membrane | 66.03 | 62.91 |
| HORVU2Hr1G075350.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 18.7 | 56.98 |
| HORVU4Hr1G022660.1 | Barley | extracellular | 22.33 | 52.94 |
| Solyc10g084830.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 48.47 | 48.02 |
| PGSC0003DMT400028760 | Potato | cytosol, peroxisome, plasma membrane | 48.47 | 48.02 |
| AT2G39130.2 | Thale cress | cytosol, nucleus, plasma membrane | 48.66 | 46.36 |
| GSMUA_Achr6P34060_001 | Banana | plasma membrane | 48.09 | 45.65 |
| AT3G54830.1 | Thale cress | nucleus | 43.89 | 42.12 |
| EES17245 | Sorghum | cytosol, peroxisome, plasma membrane | 44.27 | 40.28 |
| HORVU5Hr1G020560.3 | Barley | plasma membrane | 45.42 | 40.2 |
| Zm00001d032325_P001 | Maize | mitochondrion, plasma membrane, vacuole | 20.42 | 39.63 |
| AT2G41190.1 | Thale cress | cytosol, peroxisome, plasma membrane | 40.46 | 39.55 |
| TraesCS5B01G084900.1 | Wheat | plasma membrane | 45.04 | 39.4 |
| TraesCS5D01G091100.1 | Wheat | plasma membrane | 44.66 | 39.26 |
| TraesCS5A01G081500.1 | Wheat | plasma membrane | 44.47 | 39.03 |
| Os12t0574000-01 | Rice | plasma membrane | 43.51 | 38.38 |
| AT5G15240.1 | Thale cress | plasma membrane | 30.92 | 38.3 |
| Zm00001d030751_P001 | Maize | plasma membrane | 44.27 | 36.71 |
| Zm00001d041534_P002 | Maize | plasma membrane | 42.18 | 36.29 |
| AT3G28960.2 | Thale cress | plasma membrane | 27.67 | 35.8 |
| Zm00001d031629_P001 | Maize | cytosol, plasma membrane, vacuole | 12.21 | 35.56 |
| AT5G16740.1 | Thale cress | plasma membrane | 25.76 | 31.69 |
| AT2G42005.1 | Thale cress | plasma membrane | 19.47 | 24.7 |
| AT4G38250.1 | Thale cress | plasma membrane | 19.47 | 23.39 |
| AT5G65990.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 18.7 | 22.95 |
| AT3G11900.2 | Thale cress | plasma membrane | 18.51 | 22.45 |
Protein Annotations
| MapMan:24.2.3.4.7 | EntrezGene:820089 | ProteinID:AAF14030.1 | InterPro:AA_transpt_TM | ProteinID:AEE74751.1 | ArrayExpress:AT3G09330 |
| EnsemblPlantsGene:AT3G09330 | RefSeq:AT3G09330 | TAIR:AT3G09330 | RefSeq:AT3G09330-TAIR-G | EnsemblPlants:AT3G09330.1 | TAIR:AT3G09330.1 |
| ncoils:Coil | EMBL:DQ446648 | EMBL:DQ653073 | GO:GO:0003333 | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006865 | GO:GO:0008150 | GO:GO:0015171 | GO:GO:0016020 |
| GO:GO:0016021 | RefSeq:NP_187544.2 | PFAM:PF01490 | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF313 | UniProt:Q1PER9 |
| TMHMM:TMhelix | UniParc:UPI000034F070 | SEG:seg | : | : | : |
Description
AVT1GAmino acid transporter AVT1G [Source:UniProtKB/Swiss-Prot;Acc:Q1PER9]
Coordinates
chr3:-:2864682..2867357
Molecular Weight (calculated)
57071.0 Da
IEP (calculated)
4.613
GRAVY (calculated)
0.610
Length
524 amino acids
Sequence
(BLAST)
(BLAST)
001: MELEEQERDI LFPTDDEECQ VDVSCDDEDD DSSSYSSLSQ NDSAPWPRSY RQSVDILTGV TPPTISFIHR RSSQTSFTSS VASLYKRRPT SIANSFASST
101: SKQPLLSEKD DVLFLSSQIG LSNTDLSYGE PNFCSFPQSV LNGINVLCGI SLLTMPYAVK EGGWLGLCIL LSFAIITCYT GILLKRCLES SSDLRTYPDI
201: GQAAFGFTGR LIISILLYME LYVCCVEYII MMSDNLSRVF PNITLNIVGV SLDSPQIFAI SATLIVLPTV WLKDLSLLSY LSAGGVFVSI LLALCLFWVG
301: SVDGVGFHTG GKSLDLANLP VAIGIFGFGF SGHAVLPSIY SSMKEPSKFP LVLLISFGFC VFFYIVVAIC GYSMFGEAIQ SQFTLNMPQQ YTASKIAVWT
401: AVVVPMTKYA LALTPIVLGL EELMLPSEKM RSYGVSIFIK TILVLSTLVV ALTFPFFAIM GALMGSFLAM LVDFIFPCLC YLSILKGRLS KTQIGICVFI
501: IISGIVSGCC GTYSAIGRLV GKLD
101: SKQPLLSEKD DVLFLSSQIG LSNTDLSYGE PNFCSFPQSV LNGINVLCGI SLLTMPYAVK EGGWLGLCIL LSFAIITCYT GILLKRCLES SSDLRTYPDI
201: GQAAFGFTGR LIISILLYME LYVCCVEYII MMSDNLSRVF PNITLNIVGV SLDSPQIFAI SATLIVLPTV WLKDLSLLSY LSAGGVFVSI LLALCLFWVG
301: SVDGVGFHTG GKSLDLANLP VAIGIFGFGF SGHAVLPSIY SSMKEPSKFP LVLLISFGFC VFFYIVVAIC GYSMFGEAIQ SQFTLNMPQQ YTASKIAVWT
401: AVVVPMTKYA LALTPIVLGL EELMLPSEKM RSYGVSIFIK TILVLSTLVV ALTFPFFAIM GALMGSFLAM LVDFIFPCLC YLSILKGRLS KTQIGICVFI
501: IISGIVSGCC GTYSAIGRLV GKLD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.