Factsheet for TraesCS5B01G084900.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G081500.1	Wheat	plasma membrane	97.5	97.82
TraesCS5D01G091100.1	Wheat	plasma membrane	96.49	96.98
HORVU5Hr1G020560.3	Barley	plasma membrane	93.16	94.26
HORVU2Hr1G075350.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	27.05	94.19
HORVU4Hr1G022660.1	Barley	extracellular	33.06	89.59
EES17245	Sorghum	cytosol, peroxisome, plasma membrane	76.13	79.17
Os12t0574000-01	Rice	plasma membrane	74.12	74.75
Zm00001d030751_P001	Maize	plasma membrane	75.63	71.68
Zm00001d041534_P002	Maize	plasma membrane	70.45	69.29
Zm00001d032325_P001	Maize	mitochondrion, plasma membrane, vacuole	29.88	66.3
GSMUA_Achr6P34060_001	Banana	plasma membrane	49.08	53.26
TraesCS2B01G065200.1	Wheat	cytosol, peroxisome, plasma membrane	43.07	46.32
Solyc10g084830.1.1	Tomato	cytosol, peroxisome, plasma membrane	40.4	45.75
TraesCS6B01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	42.74	45.47
Bra001315.1-P	Field mustard	cytosol, peroxisome, plasma membrane	39.9	45.27
AT3G09340.1	Thale cress	plasma membrane	39.9	45.27
PGSC0003DMT400028760	Potato	cytosol, peroxisome, plasma membrane	39.9	45.18
CDY07919	Canola	cytosol, nucleus, plasma membrane	39.73	45.08
AT5G02170.1	Thale cress	plasma membrane	39.57	45.06
AT3G09330.1	Thale cress	cytosol, nucleus, plasma membrane	39.4	45.04
CDY55126	Canola	plasma membrane	38.23	44.55
CDY40336	Canola	plasma membrane	40.4	44.24
Bra009608.1-P	Field mustard	plasma membrane	40.23	44.06
Bra005712.1-P	Field mustard	plasma membrane	36.89	44.02
AT5G02180.1	Thale cress	plasma membrane	40.4	44.0
CDY10463	Canola	plasma membrane	39.73	43.59
CDX80808	Canola	plasma membrane	18.2	43.08
TraesCS2B01G342900.1	Wheat	plasma membrane	30.22	42.59
TraesCS7B01G093100.1	Wheat	plasma membrane	28.21	42.36
CDY55127	Canola	cytosol, plasma membrane, plastid	38.4	39.38
TraesCS6B01G381900.1	Wheat	plasma membrane	33.56	39.33
TraesCS2B01G343300.2	Wheat	plasma membrane	28.88	39.32
TraesCS2B01G299200.1	Wheat	plasma membrane	26.54	39.07
TraesCS6B01G382000.2	Wheat	cytosol, peroxisome, plasma membrane	34.89	38.85
TraesCS1B01G058900.1	Wheat	plasma membrane	27.55	38.55
TraesCS3B01G499000.1	Wheat	plasma membrane	26.21	38.39
CDX80809	Canola	plasma membrane	37.9	38.28
TraesCS2B01G343200.2	Wheat	plasma membrane	28.71	38.05
TraesCS4B01G285500.1	Wheat	plasma membrane	26.88	37.35
TraesCS4B01G285800.1	Wheat	peroxisome, plasma membrane, vacuole	26.54	36.89
TraesCS4B01G074300.1	Wheat	plasma membrane	23.21	29.39
TraesCS5B01G485500.1	Wheat	plasma membrane	18.2	25.65
TraesCS5B01G485400.1	Wheat	plasma membrane	17.86	25.42
TraesCS5B01G173000.1	Wheat	plasma membrane	17.86	25.42
TraesCS2B01G297200.1	Wheat	plasma membrane	17.36	24.76
TraesCS2B01G421800.1	Wheat	plasma membrane	17.2	24.35
TraesCS6B01G271500.1	Wheat	plasma membrane	16.69	23.75

Protein Annotations

EnsemblPlants:TraesCS5B01G084900.1	EnsemblPlantsGene:TraesCS5B01G084900	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF249	PFAM:PF01490
SEG:seg	TMHMM:TMhelix	MapMan:24.2.3.4.7	:	:	:

Description

No Description!

Coordinates

chr5B:+:107566088..107569006

Molecular Weight (calculated)

63521.8 Da

IEP (calculated)

4.961

GRAVY (calculated)

0.330

Length

599 amino acids

Sequence
(BLAST)

001: MDRDEEKGHG DRSLLFIGDE DDDLGVDRDG GSPPSSDAGS SFSDRSDDGG DGDGADDGTG TGSGSGSGSD DDADADGDKE RAPNVARQQA AWPQSYRQSI
101: DMLSAVQSPS VSSIVAASPS ITKLGSSFLK AGSSFFLKKG ATEGSLPLTR PLLPPSLSQL SQQQQQQHAG RPSTDSLQPR QPAPQPPAVQ QRPSAACLKS
201: NYIELPPPSS KCSSGQSIIN GLNVLCGVGI LTTCFGIKQA GWLSLLLLPL LGACSCYTGL LLKRCIDSSP TIETYPDIGR AAFGTPGRIF VSVVLYLELY
301: ACCVEYITLL GDSLSSVFPS AHLAFTGIYL NSHNLFAISM ALAILPSVWL RNLSLLSYLS AGGVVATITV VVCLFWVGIG DGVGFHPSGS ALNLTQLPVA
401: LGLYGYCFSG HSVFPNIYSS MKERSQFPFV LLFCFIVVTI VYSGVAATGF LMFGESTMSQ FTLNMPQQYV PSKIAIWMTI VNPYTKYALT MTPVALSIEE
501: ALPKMMRNYV AGMCVRTALV LSTVVVALSF PYFALVMALL GSLFTMLVAL ILPCACYLSI KRELVPLWEV VLCITIILIG LGCACVGSYT SINQMIGGS

Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN

Arabidopsis Description

AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.