Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- peroxisome 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G485100.1 | Wheat | plasma membrane | 97.15 | 97.15 |
| TraesCS5A01G472500.1 | Wheat | plasma membrane | 96.67 | 96.67 |
| TraesCS5B01G485500.1 | Wheat | plasma membrane | 89.07 | 88.24 |
| Os03t0817200-01 | Rice | plasma membrane | 78.15 | 78.71 |
| EER93207 | Sorghum | plasma membrane | 76.72 | 75.82 |
| HORVU5Hr1G112960.2 | Barley | cytosol | 59.62 | 71.71 |
| TraesCS2B01G297200.1 | Wheat | plasma membrane | 59.86 | 60.0 |
| TraesCS5B01G173000.1 | Wheat | plasma membrane | 59.86 | 59.86 |
| KRH68062 | Soybean | plasma membrane | 51.78 | 51.9 |
| KRG96325 | Soybean | plasma membrane | 51.31 | 51.18 |
| CDX73848 | Canola | plasma membrane | 51.31 | 50.7 |
| Bra001425.1-P | Field mustard | plasma membrane | 51.31 | 50.7 |
| CDY53922 | Canola | plasma membrane | 51.07 | 50.47 |
| CDY08487 | Canola | plasma membrane | 49.88 | 50.36 |
| CDY01068 | Canola | plasma membrane | 49.88 | 50.12 |
| AT3G11900.2 | Thale cress | plasma membrane | 50.83 | 49.54 |
| VIT_05s0062g01130.t01 | Wine grape | plasma membrane | 37.53 | 49.22 |
| Bra034803.1-P | Field mustard | plasma membrane | 49.88 | 49.18 |
| GSMUA_Achr1P27880_001 | Banana | nucleus, peroxisome, plasma membrane | 38.72 | 46.7 |
| TraesCS6B01G271500.1 | Wheat | plasma membrane | 35.63 | 35.63 |
| TraesCS2B01G421800.1 | Wheat | plasma membrane | 33.49 | 33.33 |
| TraesCS2B01G342900.1 | Wheat | plasma membrane | 25.65 | 25.41 |
| TraesCS4B01G285800.1 | Wheat | peroxisome, plasma membrane, vacuole | 25.18 | 24.59 |
| TraesCS4B01G285500.1 | Wheat | plasma membrane | 24.94 | 24.36 |
| TraesCS1B01G058900.1 | Wheat | plasma membrane | 24.47 | 24.07 |
| TraesCS3B01G499000.1 | Wheat | plasma membrane | 23.28 | 23.96 |
| TraesCS2B01G343300.2 | Wheat | plasma membrane | 24.47 | 23.41 |
| TraesCS7B01G093100.1 | Wheat | plasma membrane | 21.85 | 23.06 |
| TraesCS2B01G299200.1 | Wheat | plasma membrane | 22.09 | 22.85 |
| TraesCS2B01G343200.2 | Wheat | plasma membrane | 24.47 | 22.79 |
| TraesCS6B01G381900.1 | Wheat | plasma membrane | 24.47 | 20.16 |
| TraesCS6B01G382000.2 | Wheat | cytosol, peroxisome, plasma membrane | 24.23 | 18.96 |
| TraesCS2B01G065200.1 | Wheat | cytosol, peroxisome, plasma membrane | 24.7 | 18.67 |
| TraesCS4B01G074300.1 | Wheat | plasma membrane | 20.67 | 18.39 |
| TraesCS6B01G007400.1 | Wheat | cytosol, peroxisome, plasma membrane | 23.99 | 17.94 |
| TraesCS5B01G084900.1 | Wheat | plasma membrane | 25.42 | 17.86 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G485400.1 | EnsemblPlantsGene:TraesCS5B01G485400 | InterPro:AA_transpt_TM | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF325 | PFAM:PF01490 |
| SEG:seg | TMHMM:TMhelix | MapMan:24.2.3.4.4 | : | : | : |
Description
No Description!
Coordinates
chr5B:+:656805157..656806607
Molecular Weight (calculated)
44220.3 Da
IEP (calculated)
7.385
GRAVY (calculated)
0.736
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPEVKVPLL EGRGATPAQT LGNIVVSIVG TGVLGLPYAF RTAGWLAGAL GVAGAGAATF YCMLLLLDCR DRLREQETEE DGHGGEQRPH GDGGNYTYGD
101: LGERCFGPVG RHFTEAIIVL CQTGGTVAYL VFIGQNISSV LPALSSATVV LALLLPAEVA LSFVRSLSAL APFSILADAC TVLAVAAVVK EDVQLLVKRG
201: QPFAARSAFA GLWGVPFACG VAVFCFEGFC LTLALEASMS NRAKFRPVLL QAIAGVTVVY VSFGVCGYLA YGDATRDIVT LNLPSNWSTA AVKVVLCVAL
301: ALTFAVMMHP IHEIVESRLL APGGWVRRRG GFVERAALHL SRVAVVATLA AIACFVPAFG EFAAFVGSTV CALLSFVLPA LFHLRVVGPT ASTWARAVDY
401: FFLLSGLVFA GHGMYTVLSP Q
101: LGERCFGPVG RHFTEAIIVL CQTGGTVAYL VFIGQNISSV LPALSSATVV LALLLPAEVA LSFVRSLSAL APFSILADAC TVLAVAAVVK EDVQLLVKRG
201: QPFAARSAFA GLWGVPFACG VAVFCFEGFC LTLALEASMS NRAKFRPVLL QAIAGVTVVY VSFGVCGYLA YGDATRDIVT LNLPSNWSTA AVKVVLCVAL
301: ALTFAVMMHP IHEIVESRLL APGGWVRRRG GFVERAALHL SRVAVVATLA AIACFVPAFG EFAAFVGSTV CALLSFVLPA LFHLRVVGPT ASTWARAVDY
401: FFLLSGLVFA GHGMYTVLSP Q
001: MGLEEQGRAR EDTPLLGKGR PLSSKFKTFA NVFIAIVGAG VLGLPYAFKR TGWLMGLLTL FSVAALINHC MMLLVHIRRK LGVSNIGSFG DLGFAACGNL
101: GRFVVDILII LSQAGFCVGY LIFIGNTLAN LSKPTKSTTL MSLRHLMGVS PKSLYIWGCF PFQLGLNSIK TLTHLAPLSI FADVVDLGAM AVVIVEDIKI
201: TVVQRPQVVA FGGMSVFFYG MGVAVYAFEG VGMVLPLESE TKDKDKFGKV LALSMLFIAV MYGSFGVLGY MAFGDDTMDI ITANLGAGVV SSLVQLGLCI
301: NLFFTFPLMM NPVFEIVERR FWSGMYCVWL RWLLVLAVTL VALLVPNFAD FLSLVGSSVC CALGFVLPSL FHLMVFKDEM EWKQRALDVG ILLLGVILGV
401: SGTWSSLTEI FQE
101: GRFVVDILII LSQAGFCVGY LIFIGNTLAN LSKPTKSTTL MSLRHLMGVS PKSLYIWGCF PFQLGLNSIK TLTHLAPLSI FADVVDLGAM AVVIVEDIKI
201: TVVQRPQVVA FGGMSVFFYG MGVAVYAFEG VGMVLPLESE TKDKDKFGKV LALSMLFIAV MYGSFGVLGY MAFGDDTMDI ITANLGAGVV SSLVQLGLCI
301: NLFFTFPLMM NPVFEIVERR FWSGMYCVWL RWLLVLAVTL VALLVPNFAD FLSLVGSSVC CALGFVLPSL FHLMVFKDEM EWKQRALDVG ILLLGVILGV
401: SGTWSSLTEI FQE
Arabidopsis Description
AVT3BAmino acid transporter AVT3B [Source:UniProtKB/Swiss-Prot;Acc:F4ILY9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.