Factsheet for TraesCS6B01G382000.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, peroxisome

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, mitochondrion, peroxisome, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G331400.2	Wheat	cytosol, peroxisome, plasma membrane	97.03	97.21
TraesCS6A01G348400.1	Wheat	cytosol, peroxisome, plasma membrane	95.17	96.79
HORVU6Hr1G083720.2	Barley	plastid	95.17	87.97
TraesCS6B01G381900.1	Wheat	plasma membrane	76.02	80.04
Zm00001d018336_P002	Maize	plasma membrane	79.93	78.61
EES07655	Sorghum	plasma membrane	79.74	77.86
Zm00001d052063_P003	Maize	plasma membrane	77.7	77.41
Os02t0788800-01	Rice	cytosol, peroxisome, plasma membrane	42.75	71.21
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plasma membrane	64.68	64.44
Bra000217.1-P	Field mustard	plasma membrane	56.69	58.65
CDY35425	Canola	plasma membrane	56.69	58.65
CDY22507	Canola	plasma membrane	56.32	58.27
CDY06942	Canola	cytosol, peroxisome, plasma membrane	57.43	57.87
Bra016949.1-P	Field mustard	cytosol, peroxisome, plasma membrane	57.25	57.68
CDY67831	Canola	cytosol, peroxisome, plasma membrane	57.06	57.6
CDY23868	Canola	cytosol, nucleus, plasma membrane	56.32	57.28
Bra004605.1-P	Field mustard	cytosol, nucleus, plasma membrane	56.32	57.28
CDX79951	Canola	cytosol, nucleus, plasma membrane	56.32	57.28
AT2G41190.1	Thale cress	cytosol, peroxisome, plasma membrane	57.06	57.28
PGSC0003DMT400080507	Potato	peroxisome	55.58	57.17
VIT_08s0007g05210.t01	Wine grape	plasma membrane	53.35	55.51
Solyc03g078150.2.1	Tomato	peroxisome	53.72	55.05
KRG95106	Soybean	cytosol, peroxisome, plasma membrane	44.61	52.17
KRH33027	Soybean	plasma membrane	55.95	51.63
KRH71933	Soybean	cytosol, peroxisome, plasma membrane	42.57	51.35
KRH16006	Soybean	cytosol	32.53	51.32
KRH66774	Soybean	plasma membrane	23.42	47.19
KRH77523	Soybean	cytosol, nucleus, plasma membrane	40.52	46.09
TraesCS7B01G093100.1	Wheat	plasma membrane	31.97	43.11
TraesCS2B01G342900.1	Wheat	plasma membrane	34.01	43.06
TraesCS2B01G299200.1	Wheat	plasma membrane	32.53	43.0
TraesCS1B01G058900.1	Wheat	plasma membrane	33.27	41.82
TraesCS2B01G343300.2	Wheat	plasma membrane	33.83	41.36
TraesCS6B01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	43.12	41.21
TraesCS3B01G499000.1	Wheat	plasma membrane	30.67	40.34
TraesCS2B01G065200.1	Wheat	cytosol, peroxisome, plasma membrane	40.52	39.14
TraesCS2B01G343200.2	Wheat	plasma membrane	32.71	38.94
TraesCS4B01G285500.1	Wheat	plasma membrane	30.11	37.59
TraesCS4B01G285800.1	Wheat	peroxisome, plasma membrane, vacuole	29.74	37.12
TraesCS5B01G084900.1	Wheat	plasma membrane	38.85	34.89
TraesCS4B01G074300.1	Wheat	plasma membrane	24.91	28.33
TraesCS6B01G271500.1	Wheat	plasma membrane	19.7	25.18
TraesCS2B01G421800.1	Wheat	plasma membrane	19.52	24.82
TraesCS5B01G485500.1	Wheat	plasma membrane	19.14	24.24
TraesCS5B01G485400.1	Wheat	plasma membrane	18.96	24.23
TraesCS2B01G297200.1	Wheat	plasma membrane	17.84	22.86
TraesCS5B01G173000.1	Wheat	plasma membrane	17.66	22.57

Protein Annotations

EnsemblPlants:TraesCS6B01G382000.2	EnsemblPlantsGene:TraesCS6B01G382000	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF358	PFAM:PF01490
SEG:seg	TMHMM:TMhelix	MapMan:24.2.3.4.7	:	:	:

Description

No Description!

Coordinates

chr6B:-:656996783..657001563

Molecular Weight (calculated)

58537.8 Da

IEP (calculated)

4.717

GRAVY (calculated)

0.436

Length

538 amino acids

Sequence
(BLAST)

001: MAAAARHRKE EEDEMLLDDG DIEESPRDSF RDSDDDDDEA EEARGEDGDG VGSFESHQWP QSYRETTDTY TIAASPIFGY LGPSTSKYSI DGGRSGLASD
101: LRLPFISDKL ESVKSLRRHL LGSVRDEKLS FQYTGEIYVG QGCSVTQTVF NGINVLAGVG LLSAPFTIHE AGWAGLAVLS VFAIICCYTG VLLKHCFESK
201: DGIATYPDIG EAAFGRIGRL IISIILYTEL YSYCVEFIIL EGDNMTSIFP DVNINLFGIH VDSKHFFGVL TALVVLPTVW LRDLRVLSYL SAGGVIATLV
301: VFISVALVGT TEGIGFHQTG EAVKWSGMPF AIGIYGFCYS GHSVFPNIYQ SMSDRTKFPK ALFICFAVCT AIYGSFAIIG YLMFGDKTLS QITLNLPKES
401: FASKVALWTT VINPFTKYPL EFLSFALLLN PLARSLEELR PEGFLNETIV SIILRTSLVA STVVIAFLLP FFGLVMALIG SLLSILVAVI MPALCFLKIA
501: QNKATRPQVI ASVAIIVVGV ISAALGTYSS VASIIGYY

Best Arabidopsis Sequence Match ( AT2G41190.1 )
(BLAST)

001: MEDKNNDKEK KTDVTFEDDE DNEDLEDNSS KYENDSETDQ SDLGDLPGDA VDRDDDIDEP FISQVQWPQS FRETTDSYTI AASPIFGSLR SNPPSFYRAS
101: RSNLDVESKA PLLPERHDDS DKASATQSAW SHKGSFAEEL PIGGYGCSVI QTIFNAINVM AGVGLLSTPY TVKEAGWASM VILLLFAVIC CYTATLMKDC
201: FENKTGIITY PDIGEAAFGK YGRILICMLL YTELYSYCVE FIILEGDNLT GLFPGTSLDL LGFRLDSKHL FGILTALIVL PTVWLKDLRI ISYLSAGGVI
301: ATALIAVSVF FLGTTGGIGF HHTGQAVKWN GIPFAIGIYG FCYSGHSVFP NIYQSMADKT KFNKAVITCF IICVLLYGGV AIMGYLMFGE ATLSQITLNM
401: PQDQFFSKVA QWTTVVSPFT KYALLMNPLA RSIEELLPER MSENIWCFLL LRTALVASSV CSAFLIPFFG LMMALIGSLL SILVAIIMPA LCFIKIMGNK
501: ATRTQMILSS IIVAIGVVSG TLGTYSSVAK IIRNYQ

Arabidopsis Description

AVT1AAmino acid transporter AVT1A [Source:UniProtKB/Swiss-Prot;Acc:O80668]
SUBAcon: [cytosol,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.