CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27948	Soybean	plasma membrane	27.48	75.14
KRH16006	Soybean	cytosol	50.74	70.38
KRH71933	Soybean	cytosol, peroxisome, plasma membrane	63.21	67.04
KRG95106	Soybean	cytosol, peroxisome, plasma membrane	56.03	57.61
KRH66774	Soybean	plasma membrane	30.02	53.18
KRH33027	Soybean	plasma membrane	62.79	50.94
AT2G41190.1	Thale cress	cytosol, peroxisome, plasma membrane	56.03	49.44
PGSC0003DMT400080507	Potato	peroxisome	54.12	48.95
CDY06942	Canola	cytosol, peroxisome, plasma membrane	55.18	48.88
Bra016949.1-P	Field mustard	cytosol, peroxisome, plasma membrane	54.97	48.69
Solyc03g078150.2.1	Tomato	peroxisome	53.91	48.57
VIT_08s0007g05210.t01	Wine grape	plasma membrane	53.07	48.55
CDY67831	Canola	cytosol, peroxisome, plasma membrane	54.55	48.41
Bra000217.1-P	Field mustard	plasma membrane	52.85	48.08
CDY35425	Canola	plasma membrane	52.85	48.08
CDY22507	Canola	plasma membrane	52.64	47.88
CDY23868	Canola	cytosol, nucleus, plasma membrane	53.49	47.83
Bra004605.1-P	Field mustard	cytosol, nucleus, plasma membrane	53.07	47.45
CDX79951	Canola	cytosol, nucleus, plasma membrane	53.07	47.45
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plasma membrane	48.84	42.78
Os02t0788800-01	Rice	cytosol, peroxisome, plasma membrane	29.18	42.72
TraesCS6A01G348300.2	Wheat	cytosol, plasma membrane, vacuole	42.92	42.56
TraesCS6A01G348400.1	Wheat	cytosol, peroxisome, plasma membrane	46.93	41.97
TraesCS6D01G331300.1	Wheat	plasma membrane	44.61	40.97
Zm00001d018336_P002	Maize	plasma membrane	47.36	40.95
TraesCS6D01G331400.2	Wheat	cytosol, peroxisome, plasma membrane	46.3	40.78
EES07655	Sorghum	plasma membrane	47.36	40.65
TraesCS6B01G382000.2	Wheat	cytosol, peroxisome, plasma membrane	46.09	40.52
Zm00001d052063_P003	Maize	plasma membrane	46.09	40.37
EES07657	Sorghum	plasma membrane	43.97	39.85
TraesCS6B01G381900.1	Wheat	plasma membrane	42.71	39.53
Zm00001d018340_P001	Maize	cytosol, peroxisome, plasma membrane	43.13	38.64
HORVU6Hr1G083720.2	Barley	plastid	46.72	37.97
KRH40411	Soybean	plasma membrane	20.72	36.43
KRH71649	Soybean	cytosol, nucleus, plasma membrane	37.84	33.03
KRG89633	Soybean	plasma membrane	28.33	32.92
KRH33248	Soybean	cytosol, nucleus, plasma membrane	37.63	32.84
KRH38592	Soybean	endoplasmic reticulum	16.49	32.64
KRH40095	Soybean	plasma membrane	29.39	32.63
KRG91942	Soybean	plasma membrane	37.21	32.35
KRH30199	Soybean	extracellular, plasma membrane	25.37	32.17
KRH01177	Soybean	plasma membrane	28.75	31.7
KRH40094	Soybean	plasma membrane	28.12	31.15
KRH75803	Soybean	mitochondrion	20.51	30.99
KRG98240	Soybean	plasma membrane	28.12	30.43
KRH34828	Soybean	plasma membrane	35.94	30.3
KRH30194	Soybean	plasma membrane	27.7	29.98
KRG99991	Soybean	cytosol, nucleus, peroxisome	16.91	28.07
KRG98784	Soybean	plasma membrane	21.14	27.17
KRH58803	Soybean	mitochondrion	23.26	23.91
KRG97383	Soybean	mitochondrion	23.04	23.09
KRH31531	Soybean	mitochondrion	21.14	22.12
KRH28932	Soybean	cytosol, plasma membrane	15.22	20.0
KRH68062	Soybean	plasma membrane	16.07	18.1
KRG96325	Soybean	plasma membrane	16.07	18.01
KRH39423	Soybean	plasma membrane	14.59	16.12
KRG99573	Soybean	cytosol, nucleus, plasma membrane	0.21	0.93

Protein Annotations

EMBL:ACUP02000677	EnsemblPlants:KRH77523	EnsemblPlantsGene:GLYMA_01G218600	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015171	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF457	PFAM:PF01490	ProteinID:KRH77523	ProteinID:KRH77523.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI00023BDFD2	UniProt:K7K564	MapMan:24.2.3.4.7	:

Description

hypothetical protein

Coordinates

chr1:-:54849147..54854727

Molecular Weight (calculated)

52719.3 Da

IEP (calculated)

5.595

GRAVY (calculated)

0.129

Length

473 amino acids

Sequence
(BLAST)

001: MASNTNTNNS NKKEKDLEFF FEEDINELGA QQMDAETAKL ESESSSSDDE GNDTTRRHSF TSQQWPQSYK ETTDSYTLAA TPNFESILRV PSIIYSSFES
101: RSKNNLDIDG KTPFLSGHEG ITQSTSWKEG LVQKHLSGEL PIGRECSFLQ TVFNATNVMA GVGILSTPYT LKEAGWMSMV LMVLFAVICC YTATLMRYCF
201: ESREGITSYP DIGEAAFGKY GRIIVSIILY TELYSCCVEF ITLEGDNLTG LFPGTSLDLG SFRLDSVHLF GILAALIIIP TVWLKDLRII SILSAGGVFA
301: TLLIVVCVFC VGTINGVGFH HTGQLVNWSG IPLAIGIHGF CFAGHSVFPN IYQSMADKRQ FTKALIICFV LSITIYGGVA IMGFLMFGGE TLSQITLNMP
401: RDAFASKVAL WTTVINPFTK YPFYHKLVFY ECHQNEHDLI KFRNNFSLLF LNYTQICFVD EPIGEKSRRV ATR

Best Arabidopsis Sequence Match ( AT2G41190.1 )
(BLAST)

001: MEDKNNDKEK KTDVTFEDDE DNEDLEDNSS KYENDSETDQ SDLGDLPGDA VDRDDDIDEP FISQVQWPQS FRETTDSYTI AASPIFGSLR SNPPSFYRAS
101: RSNLDVESKA PLLPERHDDS DKASATQSAW SHKGSFAEEL PIGGYGCSVI QTIFNAINVM AGVGLLSTPY TVKEAGWASM VILLLFAVIC CYTATLMKDC
201: FENKTGIITY PDIGEAAFGK YGRILICMLL YTELYSYCVE FIILEGDNLT GLFPGTSLDL LGFRLDSKHL FGILTALIVL PTVWLKDLRI ISYLSAGGVI
301: ATALIAVSVF FLGTTGGIGF HHTGQAVKWN GIPFAIGIYG FCYSGHSVFP NIYQSMADKT KFNKAVITCF IICVLLYGGV AIMGYLMFGE ATLSQITLNM
401: PQDQFFSKVA QWTTVVSPFT KYALLMNPLA RSIEELLPER MSENIWCFLL LRTALVASSV CSAFLIPFFG LMMALIGSLL SILVAIIMPA LCFIKIMGNK
501: ATRTQMILSS IIVAIGVVSG TLGTYSSVAK IIRNYQ

Arabidopsis Description

AVT1AAmino acid transporter AVT1A [Source:UniProtKB/Swiss-Prot;Acc:O80668]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.