Factsheet for PGSC0003DMT400080507

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 2
golgi 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g078150.2.1	Tomato	peroxisome	93.31	92.95
Bra000217.1-P	Field mustard	plasma membrane	63.86	64.23
CDY35425	Canola	plasma membrane	63.86	64.23
VIT_08s0007g05210.t01	Wine grape	plasma membrane	63.48	64.22
CDY22507	Canola	plasma membrane	63.48	63.85
AT2G41190.1	Thale cress	cytosol, peroxisome, plasma membrane	64.05	62.5
CDY06942	Canola	cytosol, peroxisome, plasma membrane	62.33	61.05
Bra016949.1-P	Field mustard	cytosol, peroxisome, plasma membrane	62.14	60.86
CDY67831	Canola	cytosol, peroxisome, plasma membrane	61.95	60.79
KRH16006	Soybean	cytosol	39.58	60.7
TraesCS6A01G348300.2	Wheat	cytosol, plasma membrane, vacuole	54.88	60.17
CDY23868	Canola	cytosol, nucleus, plasma membrane	60.04	59.36
CDX79951	Canola	cytosol, nucleus, plasma membrane	59.85	59.17
Bra004605.1-P	Field mustard	cytosol, nucleus, plasma membrane	59.85	59.17
TraesCS6D01G331300.1	Wheat	plasma membrane	56.41	57.28
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plasma membrane	58.89	57.04
TraesCS6A01G348400.1	Wheat	cytosol, peroxisome, plasma membrane	57.55	56.9
TraesCS6D01G331400.2	Wheat	cytosol, peroxisome, plasma membrane	57.55	56.05
TraesCS6B01G382000.2	Wheat	cytosol, peroxisome, plasma membrane	57.17	55.58
EES07655	Sorghum	plasma membrane	58.32	55.35
Zm00001d018336_P002	Maize	plasma membrane	57.74	55.21
EES07657	Sorghum	plasma membrane	54.68	54.79
Zm00001d052063_P003	Maize	plasma membrane	56.21	54.44
KRH77523	Soybean	cytosol, nucleus, plasma membrane	48.95	54.12
TraesCS6B01G381900.1	Wheat	plasma membrane	52.2	53.42
KRG95106	Soybean	cytosol, peroxisome, plasma membrane	46.85	53.26
Zm00001d018340_P001	Maize	cytosol, peroxisome, plasma membrane	53.15	52.65
HORVU6Hr1G083720.2	Barley	plastid	57.17	51.37
KRH66774	Soybean	plasma membrane	25.62	50.19
Os02t0788800-01	Rice	cytosol, peroxisome, plasma membrane	29.64	47.99
PGSC0003DMT400019843	Potato	peroxisome, plasma membrane, plastid, vacuole	12.81	44.67
PGSC0003DMT400036273	Potato	cytosol, nucleus, plasma membrane	36.52	43.02
PGSC0003DMT400076795	Potato	plasma membrane	26.0	40.48
PGSC0003DMT400076791	Potato	plasma membrane	32.5	40.48
PGSC0003DMT400082135	Potato	plasma membrane	7.65	39.22
PGSC0003DMT400028760	Potato	cytosol, peroxisome, plasma membrane	39.01	38.56
PGSC0003DMT400008751	Potato	plasma membrane	30.59	37.56
PGSC0003DMT400019190	Potato	cytosol, nucleus, plasma membrane	41.87	36.38
PGSC0003DMT400055694	Potato	extracellular, plasma membrane	22.75	32.25
PGSC0003DMT400048045	Potato	plasma membrane	19.31	23.65
PGSC0003DMT400094217	Potato	plasma membrane	18.93	23.46
PGSC0003DMT400086252	Potato	plasma membrane	18.74	23.06
PGSC0003DMT400045065	Potato	plasma membrane, plastid	18.55	23.04
PGSC0003DMT400033422	Potato	plasma membrane	17.4	21.06

Protein Annotations

EnsemblPlants:PGSC0003DMT400080507	EnsemblPlantsGene:PGSC0003DMG400031347	EntrezGene:102589686	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0016020	GO:GO:0016021	InterPro:AA_transpt_TM
PANTHER:PTHR22950	PANTHER:PTHR22950:SF358	PFAM:PF01490	PGSC:PGSC0003DMG400031347	RefSeq:XP_006355151.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI000294A82E	UniProt:M1D3L7	MapMan:24.2.3.4.7	:	:

Description

Amino acid transporter family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031347]

Coordinates

chr3:-:31760106..31768665

Molecular Weight (calculated)

57264.8 Da

IEP (calculated)

4.626

GRAVY (calculated)

0.526

Length

523 amino acids

Sequence
(BLAST)

001: MSKKDEEFLD YLTENDSDDV EANSVNMSDD DDDDDDDAPF ASQQWPQSFR ETINSYTIAA SPNFGLIRRG SSIISEFDSK GFLDSDLRTH LLTEKERVQE
101: QNVADGISVT KASLSEKASS LHEQLTGELP IPYGCSLTQT VFNGVNVMAG VGLLSTPYTV KEAGWASLLV LVIFAVICWY TASLMKHCFE SKEGILTYPD
201: IGEAAFGKFG RIIISIILYL ELYSYCVEFI ILEGDNLTSL FPGSSLNLGG LKLDSIHFFG ILAALIILPT VWLRDLHVIS YLSACGVFTT MIIVLCVIFL
301: GTVDGVGFHN TGQVVNWSGI PFSIGVYGFC YSGHSVFPNI YQSMADKSKF NVALIICFIL CILIYGGVAM MGYLMFGQST LSQITLNMPD NSIASRVAVW
401: TTVISPFTKY ALLMNPLGRC IEELLPERIS SSLWCFILLR TVLVFSTVCV AFLLPFFGLV MALIGSLLSI LVSVIMPALC YLKIIGKKAT RTQRVFSITV
501: IAVGIVSAAL GTYSSLSGIA NKY

Best Arabidopsis Sequence Match ( AT2G41190.1 )
(BLAST)

001: MEDKNNDKEK KTDVTFEDDE DNEDLEDNSS KYENDSETDQ SDLGDLPGDA VDRDDDIDEP FISQVQWPQS FRETTDSYTI AASPIFGSLR SNPPSFYRAS
101: RSNLDVESKA PLLPERHDDS DKASATQSAW SHKGSFAEEL PIGGYGCSVI QTIFNAINVM AGVGLLSTPY TVKEAGWASM VILLLFAVIC CYTATLMKDC
201: FENKTGIITY PDIGEAAFGK YGRILICMLL YTELYSYCVE FIILEGDNLT GLFPGTSLDL LGFRLDSKHL FGILTALIVL PTVWLKDLRI ISYLSAGGVI
301: ATALIAVSVF FLGTTGGIGF HHTGQAVKWN GIPFAIGIYG FCYSGHSVFP NIYQSMADKT KFNKAVITCF IICVLLYGGV AIMGYLMFGE ATLSQITLNM
401: PQDQFFSKVA QWTTVVSPFT KYALLMNPLA RSIEELLPER MSENIWCFLL LRTALVASSV CSAFLIPFFG LMMALIGSLL SILVAIIMPA LCFIKIMGNK
501: ATRTQMILSS IIVAIGVVSG TLGTYSSVAK IIRNYQ

Arabidopsis Description

AVT1AAmino acid transporter AVT1A [Source:UniProtKB/Swiss-Prot;Acc:O80668]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.