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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • plasma membrane 4
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:peroxisome, plastid, secretory
BaCelLo:plastid
MultiLoc:plasma membrane
Plant-mPloc:golgi, plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G65990.1 PGSC0003DMT400084737 AT1G27300.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc03g032090.1.1 Tomato plasma membrane 96.96 96.96
PGSC0003DMT400086252 Potato plasma membrane 81.26 81.65
PGSC0003DMT400045065 Potato plasma membrane, plastid 79.16 80.28
VIT_07s0031g02140.t01 Wine grape plasma membrane 74.0 74.88
PGSC0003DMT400094217 Potato plasma membrane 71.43 72.27
Bra029326.1-P Field mustard peroxisome 63.47 63.32
CDY42861 Canola peroxisome 63.47 63.32
CDY47026 Canola peroxisome, plastid 63.23 62.65
KRH28932 Soybean cytosol, plasma membrane 52.46 62.22
AT5G65990.1 Thale cress endoplasmic reticulum, peroxisome, plasma membrane, plastid 62.06 62.06
GSMUA_Achr1P02810_001 Banana cytosol, plasma membrane, vacuole 56.21 60.91
KRH39423 Soybean plasma membrane 60.42 60.28
Os04t0565500-01 Rice cytosol, plasma membrane, plastid 59.72 60.0
TraesCS6B01G271500.1 Wheat plasma membrane 58.78 59.62
TraesCS2D01G400900.1 Wheat plasma membrane 59.02 59.57
TraesCS2B01G421800.1 Wheat plasma membrane 59.02 59.57
TraesCS6D01G235500.1 Wheat plasma membrane 58.55 59.38
TraesCS6A01G254100.1 Wheat plasma membrane 58.55 59.38
EES07473 Sorghum plasma membrane 59.02 59.15
HORVU6Hr1G064740.1 Barley plasma membrane 58.31 59.14
TraesCS2A01G403800.1 Wheat endoplasmic reticulum, plasma membrane, plastid, vacuole 58.55 59.1
PGSC0003DMT400033422 Potato plasma membrane 59.72 59.03
GSMUA_Achr5P11060_001 Banana plasma membrane 53.86 58.08
Zm00001d017557_P001 Maize plastid 58.55 57.87
GSMUA_AchrUn_... Banana plasma membrane, plastid, vacuole 55.97 57.18
GSMUA_Achr4P25490_001 Banana plasma membrane 52.46 57.14
OQU82139 Sorghum peroxisome 56.67 56.41
EES12671 Sorghum plastid 59.95 51.61
Zm00001d026121_P001 Maize cytosol, peroxisome, plasma membrane, plastid 59.72 51.52
Os02t0670900-02 Rice endoplasmic reticulum, plasma membrane, plastid 57.85 50.72
PGSC0003DMT400019843 Potato peroxisome, plasma membrane, plastid, vacuole 8.43 24.0
PGSC0003DMT400076795 Potato plasma membrane 17.33 22.02
PGSC0003DMT400008751 Potato plasma membrane 21.31 21.36
PGSC0003DMT400076791 Potato plasma membrane 20.37 20.71
PGSC0003DMT400082135 Potato plasma membrane 4.92 20.59
PGSC0003DMT400080507 Potato peroxisome 23.65 19.31
PGSC0003DMT400028760 Potato cytosol, peroxisome, plasma membrane 23.89 19.28
PGSC0003DMT400055694 Potato extracellular, plasma membrane 16.63 19.24
PGSC0003DMT400036273 Potato cytosol, nucleus, plasma membrane 17.8 17.12
PGSC0003DMT400019190 Potato cytosol, nucleus, plasma membrane 22.01 15.61
Protein Annotations
EnsemblPlants:PGSC0003DMT400048045EnsemblPlantsGene:PGSC0003DMG400018670EntrezGene:102602905GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:AA_transpt_TMPANTHER:PTHR22950PANTHER:PTHR22950:SF464PFAM:PF01490PGSC:PGSC0003DMG400018670RefSeq:XP_006343326.1
TMHMM:TMhelixUniParc:UPI0002952366UniProt:M1BLV7MapMan:24.2.3.4.4::
Description
Amino acid transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400018670]
Coordinates
chr3:+:3106659..3108625
Molecular Weight (calculated)
47071.4 Da
IEP (calculated)
7.902
GRAVY (calculated)
0.745
Length
427 amino acids
Sequence
(BLAST)
001: MGFEKDKASS SSHVLQIPRE DTPLLSKNHQ HLSSPSKTFA NVFIAIVGAG VLGLPYTFKR TGWVMGALML FTVAFLTYHC MMLLVYSRRK IESHLKISQI
101: SSFGDLGFAV CGPFGRFAVD AMIVLSQAGF CISYMIFIAN TLAYCFNYSK TNPNPKIFGF PPKAVYIWSC FPFQLGLNSI PTLTLLAPLS IFADVVELGA
201: MGVVMVKDVM IYVKSSHVLE AFGGFSVFFY GLGVAVYAFE GVGMVLPLEA ETKDKAKFGK ILGFSMALIS LMYGAFGVLG YFAFGEDTKD IITTNLGQGL
301: LSSLVQIGLC INLFFTFPLM MNPVYEVVER RFCEGRYCVW IRWIMVLAVT FVALFVPNFA DFLSLVGSSV CIILGFVLPA LFHLIVFKDE LRWHSLACDG
401: AIIVVAAFFS VYGTYSSLLE IFVGAKE
Best Arabidopsis Sequence Match ( AT2G42005.1 )
(BLAST)
001: MGLEEQGRAR EDTPLLGKGR PLSSKFKTFA NVFIAIVGAG VLGLPYAFKR TGWLMGLLTL FSVAALINHC MMLLVHIRRK LGVSNIGSFG DLGFAACGNL
101: GRFVVDILII LSQAGFCVGY LIFIGNTLAN LSKPTKSTTL MSLRHLMGVS PKSLYIWGCF PFQLGLNSIK TLTHLAPLSI FADVVDLGAM AVVIVEDIKI
201: TVVQRPQVVA FGGMSVFFYG MGVAVYAFEG VGMVLPLESE TKDKDKFGKV LALSMLFIAV MYGSFGVLGY MAFGDDTMDI ITANLGAGVV SSLVQLGLCI
301: NLFFTFPLMM NPVFEIVERR FWSGMYCVWL RWLLVLAVTL VALLVPNFAD FLSLVGSSVC CALGFVLPSL FHLMVFKDEM EWKQRALDVG ILLLGVILGV
401: SGTWSSLTEI FQE
Arabidopsis Description
AVT3BAmino acid transporter AVT3B [Source:UniProtKB/Swiss-Prot;Acc:F4ILY9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.