Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g015640.2.1 | Tomato | cytosol | 74.88 | 76.73 |
| VIT_01s0010g03800.t01 | Wine grape | cytosol | 37.68 | 39.8 |
| KRH31520 | Soybean | cytosol | 28.02 | 38.16 |
| KRG97393 | Soybean | nucleus | 32.85 | 36.17 |
| AT1G27300.1 | Thale cress | nucleus | 30.92 | 32.0 |
| CDY03907 | Canola | cytosol | 28.02 | 29.9 |
| CDX84933 | Canola | cytosol | 27.54 | 28.93 |
| Bra030034.1-P | Field mustard | cytosol | 27.05 | 28.28 |
| Os02t0509600-01 | Rice | plasma membrane | 28.5 | 27.96 |
| CDY15722 | Canola | cytosol | 26.57 | 27.78 |
| TraesCS2B01G365000.1 | Wheat | cytosol | 25.6 | 27.6 |
| CDY27605 | Canola | cytosol | 26.57 | 27.36 |
| KRH76090 | Soybean | nucleus | 14.98 | 26.96 |
| TraesCS2A01G346700.1 | Wheat | cytosol | 25.12 | 26.8 |
| Zm00001d050563_P001 | Maize | nucleus | 26.09 | 26.73 |
| Bra032817.1-P | Field mustard | nucleus | 25.6 | 26.37 |
| TraesCS2D01G345400.1 | Wheat | cytosol | 24.64 | 26.02 |
| EES05123 | Sorghum | nucleus | 26.57 | 25.58 |
| HORVU2Hr1G084420.1 | Barley | cytosol | 23.67 | 25.52 |
| Zm00001d016570_P001 | Maize | cytosol | 25.6 | 24.65 |
Protein Annotations
| EntrezGene:102586616 | MapMan:35.2 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 | GO:GO:0005802 | GO:GO:0016020 | GO:GO:0016021 |
| UniProt:M1D7Y0 | EnsemblPlantsGene:PGSC0003DMG400034312 | PGSC:PGSC0003DMG400034312 | EnsemblPlants:PGSC0003DMT400084737 | PANTHER:PTHR35280 | TMHMM:TMhelix |
| UniParc:UPI0002949B2D | RefSeq:XP_006352174.1 | SEG:seg | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400034312]
Coordinates
chr5:-:14414952..14416992
Molecular Weight (calculated)
23987.7 Da
IEP (calculated)
4.621
GRAVY (calculated)
-0.585
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MERERERVKK VELIQKAINQ LINHEQLQSK TCHLLDDSFV AVDDDEETDH RHQLLSQLLT QLDSLKEESQ FDQMNESTNL QEAPVELEAE EEEEKVVKEL
101: RKIQKQNFIT QCLLSAMIVL TLTWQLSEVS IILKMKDGLN HPFRSITSML TGWIKGPPPV LNGRDDDLNN SAKHLKHQVE AMSLPKLKVP ELPHMELPSF
201: DFINEED
101: RKIQKQNFIT QCLLSAMIVL TLTWQLSEVS IILKMKDGLN HPFRSITSML TGWIKGPPPV LNGRDDDLNN SAKHLKHQVE AMSLPKLKVP ELPHMELPSF
201: DFINEED
001: MESSEDVENL SRAIEKLLHE KRKREASGDA FIEDADDQLF LSSLISQLES PNPKGKEDVI TGEEEEKEEE SADSSPSKGK SEGQRQLEES IEEIAKDIKK
101: VKKQNKITHV LLSATIILTL VWQLSEYSMI FMLKDRISHP VRSIGGMLNG MFKGKLRPIK NQLAGTSNSN DQNNHGNGSH TGPQLQVPEL LREFGFDDEE
101: VKKQNKITHV LLSATIILTL VWQLSEYSMI FMLKDRISHP VRSIGGMLNG MFKGKLRPIK NQLAGTSNSN DQNNHGNGSH TGPQLQVPEL LREFGFDDEE
Arabidopsis Description
F17L21.9 [Source:UniProtKB/TrEMBL;Acc:Q9FZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.