Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc10g086690.1.1 | Tomato | cytosol, golgi, mitochondrion, plasma membrane | 96.14 | 93.52 |
PGSC0003DMT400028621 | Potato | cytosol, golgi, plasma membrane | 85.61 | 78.96 |
PGSC0003DMT400052472 | Potato | plasma membrane | 83.51 | 75.32 |
VIT_08s0007g01510.t01 | Wine grape | cytosol, golgi, mitochondrion, plasma membrane | 81.4 | 73.42 |
KRG88789 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 80.35 | 72.93 |
Zm00001d046198_P001 | Maize | endoplasmic reticulum, plasma membrane | 12.28 | 72.92 |
KRH75771 | Soybean | cytosol, golgi, mitochondrion, peroxisome | 80.0 | 72.61 |
CDX76176 | Canola | mitochondrion | 76.14 | 71.85 |
CDY13168 | Canola | mitochondrion, plasma membrane | 76.14 | 71.85 |
Bra014848.1-P | Field mustard | mitochondrion | 75.09 | 70.86 |
AT3G54020.1 | Thale cress | mitochondrion, plasma membrane | 75.79 | 70.82 |
KRH00099 | Soybean | golgi | 77.89 | 70.25 |
CDX91395 | Canola | mitochondrion, plasma membrane | 75.09 | 70.16 |
AT2G37940.1 | Thale cress | mitochondrion, plasma membrane | 74.74 | 69.84 |
CDY14501 | Canola | mitochondrion, plasma membrane | 74.74 | 68.93 |
CDY69104 | Canola | mitochondrion, plasma membrane | 74.74 | 68.93 |
KRH49241 | Soybean | mitochondrion | 76.49 | 68.77 |
Bra000029.1-P | Field mustard | plasma membrane | 71.23 | 68.58 |
Bra017148.1-P | Field mustard | plasma membrane | 73.33 | 68.52 |
CDY18417 | Canola | plasma membrane | 73.33 | 68.52 |
CDY07761 | Canola | mitochondrion, plasma membrane | 74.04 | 68.51 |
CDX74925 | Canola | mitochondrion, plasma membrane | 73.33 | 68.3 |
CDX93341 | Canola | plasma membrane | 72.98 | 68.2 |
Bra005148.1-P | Field mustard | mitochondrion, plasma membrane | 72.28 | 67.99 |
Zm00001d038343_P001 | Maize | plasma membrane | 72.98 | 65.2 |
GSMUA_Achr10P... | Banana | cytosol, golgi, mitochondrion, plasma membrane | 71.58 | 64.97 |
EES19630 | Sorghum | cytosol, golgi, plasma membrane | 72.63 | 64.89 |
GSMUA_AchrUn_... | Banana | cytosol, golgi, mitochondrion, plasma membrane | 71.58 | 64.56 |
GSMUA_Achr6P23620_001 | Banana | golgi | 70.53 | 64.22 |
TraesCS3B01G396900.1 | Wheat | golgi | 72.98 | 63.8 |
TraesCS3A01G365000.1 | Wheat | plasma membrane | 72.98 | 63.8 |
TraesCS3D01G358200.1 | Wheat | golgi | 72.63 | 63.5 |
Os05t0452900-02 | Rice | cytosol, golgi, mitochondrion, plasma membrane | 71.93 | 63.08 |
Zm00001d030613_P003 | Maize | mitochondrion, plasma membrane | 69.12 | 62.94 |
GSMUA_Achr3P17660_001 | Banana | cytosol, golgi, mitochondrion, plasma membrane | 69.12 | 62.74 |
Os05t0287800-01 | Rice | mitochondrion | 68.77 | 62.62 |
HORVU1Hr1G073060.1 | Barley | plasma membrane | 69.82 | 62.38 |
HORVU1Hr1G073040.1 | Barley | plasma membrane | 69.82 | 62.38 |
KXG23698 | Sorghum | mitochondrion | 68.07 | 61.98 |
TraesCS1D01G279500.1 | Wheat | plasma membrane | 69.82 | 61.8 |
EES01758 | Sorghum | mitochondrion | 70.18 | 61.73 |
Zm00001d041608_P001 | Maize | mitochondrion, plasma membrane | 67.72 | 61.66 |
TraesCS1B01G289300.1 | Wheat | plasma membrane | 69.47 | 61.49 |
Os01t0850100-01 | Rice | cytosol, golgi, mitochondrion, plasma membrane | 70.18 | 61.35 |
Zm00001d012380_P002 | Maize | plasma membrane | 69.47 | 61.11 |
TraesCS1A01G280400.1 | Wheat | plasma membrane | 68.77 | 61.06 |
Zm00001d042851_P003 | Maize | golgi, plasma membrane, plastid | 69.82 | 56.06 |
CDY18431 | Canola | plasma membrane | 44.91 | 55.17 |
HORVU3Hr1G085630.8 | Barley | plastid | 67.02 | 54.26 |
Protein Annotations
EnsemblPlants:PGSC0003DMT400049398 | EnsemblPlantsGene:PGSC0003DMG400019190 | EntrezGene:102592126 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
InterPro:Sphingomyelin_synth-like_dom | PANTHER:PTHR21290 | PANTHER:PTHR21290:SF46 | PFAM:PF14360 | PGSC:PGSC0003DMG400019190 | RefSeq:XP_006349480.1 |
TMHMM:TMhelix | UniParc:UPI000294CAC8 | UniProt:M1BNN6 | MapMan:5.4.13.1 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400019190]
Coordinates
chr10:-:50685153..50689461
Molecular Weight (calculated)
32820.4 Da
IEP (calculated)
9.643
GRAVY (calculated)
0.279
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFYIGREAS KLWKRICTET GIEINLLSEK WKYILGGLIF QYIHGFAARG VHYIHRPGPT LQDVGFFLLR ELGQDKGYIS ETVFTTLFLS FVLWTFHPFF
101: FKIKKIYTVL IWCRVLAFLA ACQFLRIITF YSTQLPGPNY HCREGSKLAT LPPPNSVLEV LLINFPRGML YGCGDLIFSS HMIFSLIFVR TYHKYGTRRF
201: IKLCAWLAVI AQSFLIVASR KHYTVDVVVA WYTVNLVVFF VDKQLPELPD RTSAALILPL SKDSKAKEEN HKLLNANSGD PAEWI
101: FKIKKIYTVL IWCRVLAFLA ACQFLRIITF YSTQLPGPNY HCREGSKLAT LPPPNSVLEV LLINFPRGML YGCGDLIFSS HMIFSLIFVR TYHKYGTRRF
201: IKLCAWLAVI AQSFLIVASR KHYTVDVVVA WYTVNLVVFF VDKQLPELPD RTSAALILPL SKDSKAKEEN HKLLNANSGD PAEWI
001: MTLYIRREAS KLWRRFCSEI TTEIGLLAEN WKYLLAGLLC QYIHGLAARG VHYIHRPGPT LQDSGFFVLP ELGQDKGFIS ETVFTCVFLS FFLWTFHPFI
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT
Arabidopsis Description
IPCS1Phosphatidylinositol:ceramide inositolphosphotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M325]
SUBAcon: [mitochondrion,plasma membrane]
SUBAcon: [mitochondrion,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.