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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • golgi 1
  • mitochondrion 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:golgi, mitochondrion, plasma membrane
MultiLoc:golgi
Predotar:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU2Hr1G074990.1
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G54020.1 HORVU2Hr1G074990.1 AT2G23420.1 21798944
AT3G54020.1 HORVU7Hr1G088900.1 AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU1Hr1G073060.1 Barley plasma membrane 100.0 100.0
TraesCS1D01G279500.1 Wheat plasma membrane 97.18 96.27
TraesCS1A01G280400.1 Wheat plasma membrane 96.24 95.64
TraesCS1B01G289300.1 Wheat plasma membrane 95.61 94.72
Os05t0452900-02 Rice cytosol, golgi, mitochondrion, plasma membrane 86.21 84.62
Zm00001d038343_P001 Maize plasma membrane 82.45 82.45
EES19630 Sorghum cytosol, golgi, plasma membrane 82.45 82.45
GSMUA_Achr10P... Banana cytosol, golgi, mitochondrion, plasma membrane 72.73 73.89
GSMUA_Achr3P17660_001 Banana cytosol, golgi, mitochondrion, plasma membrane 71.79 72.93
CDX76176 Canola mitochondrion 68.65 72.52
KRH00099 Soybean golgi 71.79 72.47
GSMUA_Achr6P23620_001 Banana golgi 70.85 72.2
CDY13168 Canola mitochondrion, plasma membrane 68.34 72.19
AT3G54020.1 Thale cress mitochondrion, plasma membrane 68.97 72.13
KRG88789 Soybean cytosol, golgi, mitochondrion, plasma membrane 70.53 71.66
Bra014848.1-P Field mustard mitochondrion 67.71 71.52
GSMUA_AchrUn_... Banana cytosol, golgi, mitochondrion, plasma membrane 70.85 71.52
VIT_08s0007g01510.t01 Wine grape cytosol, golgi, mitochondrion, plasma membrane 70.22 70.89
VIT_06s0004g05800.t01 Wine grape mitochondrion 64.58 70.79
KRH75771 Soybean cytosol, golgi, mitochondrion, peroxisome 69.59 70.7
KRH49241 Soybean mitochondrion 69.91 70.35
PGSC0003DMT400049398 Potato plasma membrane 62.38 69.82
CDY18417 Canola plasma membrane 66.14 69.18
CDX93341 Canola plasma membrane 66.14 69.18
CDX91395 Canola mitochondrion, plasma membrane 66.14 69.18
Bra017148.1-P Field mustard plasma membrane 66.14 69.18
Bra000029.1-P Field mustard plasma membrane 63.64 68.58
AT2G37940.1 Thale cress mitochondrion, plasma membrane 65.52 68.52
CDY69104 Canola mitochondrion, plasma membrane 66.14 68.28
CDY14501 Canola mitochondrion, plasma membrane 66.14 68.28
CDY07761 Canola mitochondrion, plasma membrane 65.83 68.18
CDX74925 Canola mitochondrion, plasma membrane 65.2 67.97
Solyc10g086690.1.1 Tomato cytosol, golgi, mitochondrion, plasma membrane 62.38 67.92
Bra005148.1-P Field mustard mitochondrion, plasma membrane 64.26 67.66
PGSC0003DMT400028621 Potato cytosol, golgi, plasma membrane 65.2 67.31
Solyc10g084990.1.1 Tomato cytosol, golgi, mitochondrion, plasma membrane 64.58 66.03
Solyc09g011740.2.1 Tomato cytosol, endoplasmic reticulum, plasma membrane 65.2 65.82
AT2G29525.1 Thale cress plasma membrane 59.56 65.74
HORVU3Hr1G085630.8 Barley plastid 72.41 65.62
PGSC0003DMT400052472 Potato plasma membrane 64.26 64.87
CDY18431 Canola plasma membrane 41.69 57.33
Protein Annotations
EnsemblPlants:HORVU1Hr1G073040.1EnsemblPlantsGene:HORVU1Hr1G073040GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:Sphingomyelin_synth-like_dom
PANTHER:PTHR21290PANTHER:PTHR21290:SF46PFAM:PF14360SEG:segTMHMM:TMhelixUniParc:UPI000B485023
UniProt:A0A287G7F8MapMan:5.4.13.1::::
Description
No Description!
Coordinates
chrchr1H:+:500888949..500893295
Molecular Weight (calculated)
36826.1 Da
IEP (calculated)
9.673
GRAVY (calculated)
0.016
Length
319 amino acids
Sequence
(BLAST)
001: MTIYLAREAS KVWRKVCAET TTELPLLREK WPLLLAGIVF QYIHGLAARG VHYLHRPGPL LQDLGFMALP ELGQDRNYIS ECTFVFIFFS FFLWTFHPFI
101: YHSKRFYTIL IWRRVLAFLV ASQVLRIITF YSTQLPGPNY HCREGSTMAT LPPPNNVLEV LLINFPRGVN LGCGDLIFSS HMIFTLVFVR TYHKYGSKRF
201: IKLLAWIMAI IQSLLIIAAR KHYTVDVVVA WYAVNLVVFF VDNKLPEMPD RTNGSPLIPL STKDKDGRLK DEKDVRLKDE FHKLLNGNHG DPTDRRQRVQ
301: MNGRHPEEDM LSDATPNGA
Best Arabidopsis Sequence Match ( AT2G29525.1 )
(BLAST)
001: MPVYVDREAP KLWRRIYSEA TLEASLLAEK WKLVLAGLVF QYIHGLAAHG VHYLHRPGPT LQDAGFFILP ALGQDKAFFS ETVFVTIFGS FILWTFHPFV
101: SHSKKICTVL IWCRVFVYLA ASQSLRIITF FATQLPGPNY HCREGSKLAK IPPPKNVLEV LLINFPDGVI YGCGDLIFSS HTIFTLVFVR TYQRYGTRRW
201: IKHLAWLMAV IQSILIIASR KHYTVDIVVA WYTVNLVMFY VDSKLPEMAE RSSGPSPTPL LPLSTKDSKN KSKEDHQRLL NENNVADDH
Arabidopsis Description
IPCS3Phosphatidylinositol:ceramide inositolphosphotransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Y01]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.