CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 4
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046198_P001	Maize	endoplasmic reticulum, plasma membrane	14.22	68.75
CDX93341	Canola	plasma membrane	75.43	57.38
CDX74925	Canola	mitochondrion, plasma membrane	75.43	57.19
CDY18417	Canola	plasma membrane	75.0	57.05
AT2G37940.1	Thale cress	mitochondrion, plasma membrane	74.57	56.72
CDX91395	Canola	mitochondrion, plasma membrane	74.14	56.39
CDY14501	Canola	mitochondrion, plasma membrane	75.0	56.31
CDY69104	Canola	mitochondrion, plasma membrane	75.0	56.31
CDY07761	Canola	mitochondrion, plasma membrane	74.57	56.17
CDX76176	Canola	mitochondrion	65.09	50.0
CDY13168	Canola	mitochondrion, plasma membrane	65.09	50.0
KRG88789	Soybean	cytosol, golgi, mitochondrion, plasma membrane	62.07	45.86
VIT_08s0007g01510.t01	Wine grape	cytosol, golgi, mitochondrion, plasma membrane	61.21	44.94
PGSC0003DMT400049398	Potato	plasma membrane	55.17	44.91
KRH75771	Soybean	cytosol, golgi, mitochondrion, peroxisome	60.78	44.9
PGSC0003DMT400028621	Potato	cytosol, golgi, plasma membrane	59.05	44.34
KRH00099	Soybean	golgi	59.91	43.99
KRH49241	Soybean	mitochondrion	59.91	43.85
Solyc09g011740.2.1	Tomato	cytosol, endoplasmic reticulum, plasma membrane	59.05	43.35
Solyc10g086690.1.1	Tomato	cytosol, golgi, mitochondrion, plasma membrane	54.74	43.34
PGSC0003DMT400052472	Potato	plasma membrane	58.62	43.04
GSMUA_Achr3P17660_001	Banana	cytosol, golgi, mitochondrion, plasma membrane	58.19	42.99
Solyc10g084990.1.1	Tomato	cytosol, golgi, mitochondrion, plasma membrane	57.76	42.95
HORVU1Hr1G073040.1	Barley	plasma membrane	57.33	41.69
HORVU1Hr1G073060.1	Barley	plasma membrane	57.33	41.69
GSMUA_Achr6P23620_001	Banana	golgi	56.03	41.53
Os05t0287800-01	Rice	mitochondrion	56.03	41.53
GSMUA_AchrUn_...	Banana	cytosol, golgi, mitochondrion, plasma membrane	56.47	41.46
GSMUA_Achr10P...	Banana	cytosol, golgi, mitochondrion, plasma membrane	56.03	41.4
Zm00001d038343_P001	Maize	plasma membrane	56.9	41.38
TraesCS1B01G289300.1	Wheat	plasma membrane	56.47	40.68
TraesCS1D01G279500.1	Wheat	plasma membrane	56.47	40.68
Zm00001d030613_P003	Maize	mitochondrion, plasma membrane	54.31	40.26
TraesCS3D01G358200.1	Wheat	golgi	56.47	40.18
TraesCS3A01G365000.1	Wheat	plasma membrane	56.47	40.18
TraesCS3B01G396900.1	Wheat	golgi	56.47	40.18
EES01758	Sorghum	mitochondrion	56.03	40.12
Os05t0452900-02	Rice	cytosol, golgi, mitochondrion, plasma membrane	56.03	40.0
Zm00001d041608_P001	Maize	mitochondrion, plasma membrane	53.88	39.94
TraesCS1A01G280400.1	Wheat	plasma membrane	55.17	39.88
EES19630	Sorghum	cytosol, golgi, plasma membrane	54.74	39.81
KXG23698	Sorghum	mitochondrion	53.45	39.62
Zm00001d012380_P002	Maize	plasma membrane	55.17	39.51
Os01t0850100-01	Rice	cytosol, golgi, mitochondrion, plasma membrane	55.17	39.26
HORVU3Hr1G085630.8	Barley	plastid	56.03	36.93
Zm00001d042851_P003	Maize	golgi, plasma membrane, plastid	55.6	36.34

Protein Annotations

EnsemblPlants:CDY18431	EnsemblPlantsGene:GSBRNA2T00005426001	GO:A0A078FZF7	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Sphingomyelin_synth-like_dom	PANTHER:PTHR21290	PANTHER:PTHR21290:SF46	PFAM:PF14360	ProteinID:CDY18431	ProteinID:CDY18431.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF2746	UniProt:A0A078FZF7	MapMan:5.4.13.1	:

Description

BnaA04g21560DBnaA04g21560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZF7]

Coordinates

chrLK032085:+:453906..455289

Molecular Weight (calculated)

26742.7 Da

IEP (calculated)

10.004

GRAVY (calculated)

0.274

Length

232 amino acids

Sequence
(BLAST)

001: MFITLILTFR DVLINARGVH SIHRAGPTLQ DLGFFLLPEL GQERSYISET VFTSVFVSFF LWTFHPFILK SKIIYTVLIW CRVVAFLFVI PLPYYSLRVI
101: TFYSTQLPGP NYHCREILNT KVSSCHVPWP KNHLLFFLSL TRIFLFFVHT YQKYGTKRFI KLFGWLTALV QSLLIIASRK HYTVDVVVAW YKENHKLLNG
201: NGADPADWTK GSQVNGKIDS NGVHTDNSMS GA

Best Arabidopsis Sequence Match ( AT2G29525.1 )
(BLAST)

001: MPVYVDREAP KLWRRIYSEA TLEASLLAEK WKLVLAGLVF QYIHGLAAHG VHYLHRPGPT LQDAGFFILP ALGQDKAFFS ETVFVTIFGS FILWTFHPFV
101: SHSKKICTVL IWCRVFVYLA ASQSLRIITF FATQLPGPNY HCREGSKLAK IPPPKNVLEV LLINFPDGVI YGCGDLIFSS HTIFTLVFVR TYQRYGTRRW
201: IKHLAWLMAV IQSILIIASR KHYTVDIVVA WYTVNLVMFY VDSKLPEMAE RSSGPSPTPL LPLSTKDSKN KSKEDHQRLL NENNVADDH

Arabidopsis Description

IPCS3Phosphatidylinositol:ceramide inositolphosphotransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Y01]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.