Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 3
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr2P08220_001 | |
| GSMUA_Achr4P10230_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54020.1 | GSMUA_Achr11P... | AT2G23420.1 | 21798944 |
| AT3G54020.1 | GSMUA_Achr2P08220_001 | AT2G23420.1 | 21798944 |
| AT3G54020.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P17660_001 | Banana | cytosol, golgi, mitochondrion, plasma membrane | 86.58 | 86.31 |
| GSMUA_Achr10P... | Banana | cytosol, golgi, mitochondrion, plasma membrane | 84.98 | 84.71 |
| GSMUA_AchrUn_... | Banana | cytosol, golgi, mitochondrion, plasma membrane | 84.98 | 84.18 |
| VIT_08s0007g01510.t01 | Wine grape | cytosol, golgi, mitochondrion, plasma membrane | 75.72 | 75.0 |
| EES19630 | Sorghum | cytosol, golgi, plasma membrane | 74.44 | 73.04 |
| CDY13168 | Canola | mitochondrion, plasma membrane | 70.29 | 72.85 |
| CDX76176 | Canola | mitochondrion | 69.97 | 72.52 |
| Os01t0850100-01 | Rice | cytosol, golgi, mitochondrion, plasma membrane | 75.4 | 72.39 |
| KRG88789 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 72.52 | 72.29 |
| TraesCS3B01G396900.1 | Wheat | golgi | 75.08 | 72.09 |
| TraesCS3A01G365000.1 | Wheat | plasma membrane | 75.08 | 72.09 |
| KRH00099 | Soybean | golgi | 72.52 | 71.84 |
| AT3G54020.1 | Thale cress | mitochondrion, plasma membrane | 69.97 | 71.8 |
| Zm00001d038343_P001 | Maize | plasma membrane | 73.16 | 71.79 |
| TraesCS3D01G358200.1 | Wheat | golgi | 74.76 | 71.78 |
| Bra014848.1-P | Field mustard | mitochondrion | 69.01 | 71.52 |
| KRH75771 | Soybean | cytosol, golgi, mitochondrion, peroxisome | 71.57 | 71.34 |
| VIT_06s0004g05800.t01 | Wine grape | mitochondrion | 66.13 | 71.13 |
| HORVU1Hr1G073060.1 | Barley | plasma membrane | 72.2 | 70.85 |
| HORVU1Hr1G073040.1 | Barley | plasma membrane | 72.2 | 70.85 |
| TraesCS1B01G289300.1 | Wheat | plasma membrane | 72.84 | 70.81 |
| Os05t0452900-02 | Rice | cytosol, golgi, mitochondrion, plasma membrane | 73.48 | 70.77 |
| EES01758 | Sorghum | mitochondrion | 73.16 | 70.68 |
| KRH49241 | Soybean | mitochondrion | 71.57 | 70.66 |
| PGSC0003DMT400049398 | Potato | plasma membrane | 64.22 | 70.53 |
| TraesCS1D01G279500.1 | Wheat | plasma membrane | 72.2 | 70.19 |
| Bra000029.1-P | Field mustard | plasma membrane | 66.13 | 69.93 |
| CDY69104 | Canola | mitochondrion, plasma membrane | 69.01 | 69.9 |
| PGSC0003DMT400028621 | Potato | cytosol, golgi, plasma membrane | 69.01 | 69.9 |
| CDY14501 | Canola | mitochondrion, plasma membrane | 69.01 | 69.9 |
| Solyc10g084990.1.1 | Tomato | cytosol, golgi, mitochondrion, plasma membrane | 69.33 | 69.55 |
| CDY18417 | Canola | plasma membrane | 67.73 | 69.51 |
| Bra017148.1-P | Field mustard | plasma membrane | 67.73 | 69.51 |
| AT2G37940.1 | Thale cress | mitochondrion, plasma membrane | 67.73 | 69.51 |
| CDY07761 | Canola | mitochondrion, plasma membrane | 68.37 | 69.48 |
| Zm00001d012380_P002 | Maize | plasma membrane | 71.89 | 69.44 |
| CDX91395 | Canola | mitochondrion, plasma membrane | 67.41 | 69.18 |
| CDX93341 | Canola | plasma membrane | 67.41 | 69.18 |
| TraesCS1A01G280400.1 | Wheat | plasma membrane | 70.93 | 69.16 |
| Bra005148.1-P | Field mustard | mitochondrion, plasma membrane | 66.45 | 68.65 |
| CDX74925 | Canola | mitochondrion, plasma membrane | 67.09 | 68.63 |
| Solyc10g086690.1.1 | Tomato | cytosol, golgi, mitochondrion, plasma membrane | 62.94 | 67.24 |
| AT2G29525.1 | Thale cress | plasma membrane | 61.98 | 67.13 |
| Zm00001d042851_P003 | Maize | golgi, plasma membrane, plastid | 74.12 | 65.35 |
| Solyc09g011740.2.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane | 65.18 | 64.56 |
| PGSC0003DMT400052472 | Potato | plasma membrane | 64.54 | 63.92 |
| HORVU3Hr1G085630.8 | Barley | plastid | 66.13 | 58.81 |
| CDY18431 | Canola | plasma membrane | 41.53 | 56.03 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P23620_001 | EnsemblPlants:GSMUA_Achr6T23620_001 | EnsemblPlantsGene:GSMUA_Achr6G23620_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Sphingomyelin_synth-like_dom | PANTHER:PTHR21290 | PANTHER:PTHR21290:SF46 | PFAM:PF14360 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002950975 | UniProt:M0T9L0 | MapMan:5.4.13.1 | : | : | : |
Description
phosphatidic acid phosphatase-related, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G23620_001]
Coordinates
chr6:+:23864419..23868936
Molecular Weight (calculated)
36105.1 Da
IEP (calculated)
9.421
GRAVY (calculated)
0.022
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLYIGREAP KLWRKICMET YVELQLFMEK WKLLLAGLIF QYIHGLAARG VHYLHRPGPT LQDAGYMILP ELGKERGYVS ESLFTFIFLS FILWTFHPFV
101: YHSKRFYTVL LWRRILSFLV ASQALRIITF YSTQLPGPNY HCREGGELAR LPPPESVTEV LLINFPQGVI YGCGDLIFSS HMIFTLVFVL TYHKYGTKRF
201: IKLLAWVLAI VQSLLIVASR KHYTVDVVVA WYTVNLVVFF VDKKLPEMPD RSNGSQPLLP YVKDKDEKSR EDHHKLLNGN SVDTADWRQR LQVNGKHGED
301: GNHIHSESAA NGA
101: YHSKRFYTVL LWRRILSFLV ASQALRIITF YSTQLPGPNY HCREGGELAR LPPPESVTEV LLINFPQGVI YGCGDLIFSS HMIFTLVFVL TYHKYGTKRF
201: IKLLAWVLAI VQSLLIVASR KHYTVDVVVA WYTVNLVVFF VDKKLPEMPD RSNGSQPLLP YVKDKDEKSR EDHHKLLNGN SVDTADWRQR LQVNGKHGED
301: GNHIHSESAA NGA
001: MTLYIRREAS KLWRRFCSEI TTEIGLLAEN WKYLLAGLLC QYIHGLAARG VHYIHRPGPT LQDSGFFVLP ELGQDKGFIS ETVFTCVFLS FFLWTFHPFI
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT
Arabidopsis Description
IPCS1Phosphatidylinositol:ceramide inositolphosphotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M325]
SUBAcon: [plasma membrane,mitochondrion]
SUBAcon: [plasma membrane,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.