Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13168 | Canola | mitochondrion, plasma membrane | 99.34 | 99.34 |
| Bra014848.1-P | Field mustard | mitochondrion | 99.01 | 99.01 |
| AT3G54020.1 | Thale cress | mitochondrion, plasma membrane | 92.72 | 91.8 |
| CDX91395 | Canola | mitochondrion, plasma membrane | 86.42 | 85.57 |
| CDX74925 | Canola | mitochondrion, plasma membrane | 86.42 | 85.29 |
| CDY18417 | Canola | plasma membrane | 86.09 | 85.25 |
| CDX93341 | Canola | plasma membrane | 85.76 | 84.92 |
| CDY07761 | Canola | mitochondrion, plasma membrane | 86.42 | 84.74 |
| CDY14501 | Canola | mitochondrion, plasma membrane | 86.09 | 84.14 |
| CDY69104 | Canola | mitochondrion, plasma membrane | 86.09 | 84.14 |
| KRG88789 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 80.46 | 77.39 |
| VIT_08s0007g01510.t01 | Wine grape | cytosol, golgi, mitochondrion, plasma membrane | 80.79 | 77.22 |
| KRH75771 | Soybean | cytosol, golgi, mitochondrion, peroxisome | 79.8 | 76.75 |
| KRH00099 | Soybean | golgi | 79.8 | 76.27 |
| PGSC0003DMT400049398 | Potato | plasma membrane | 71.85 | 76.14 |
| PGSC0003DMT400028621 | Potato | cytosol, golgi, plasma membrane | 77.81 | 76.05 |
| Solyc10g084990.1.1 | Tomato | cytosol, golgi, mitochondrion, plasma membrane | 77.48 | 75.0 |
| KRH49241 | Soybean | mitochondrion | 78.48 | 74.76 |
| Solyc10g086690.1.1 | Tomato | cytosol, golgi, mitochondrion, plasma membrane | 71.52 | 73.72 |
| Solyc09g011740.2.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane | 75.17 | 71.84 |
| PGSC0003DMT400052472 | Potato | plasma membrane | 74.83 | 71.52 |
| GSMUA_Achr10P... | Banana | cytosol, golgi, mitochondrion, plasma membrane | 73.84 | 71.02 |
| GSMUA_AchrUn_... | Banana | cytosol, golgi, mitochondrion, plasma membrane | 74.17 | 70.89 |
| Zm00001d046198_P001 | Maize | endoplasmic reticulum, plasma membrane | 11.26 | 70.83 |
| EES19630 | Sorghum | cytosol, golgi, plasma membrane | 74.5 | 70.53 |
| GSMUA_Achr6P23620_001 | Banana | golgi | 72.52 | 69.97 |
| Zm00001d038343_P001 | Maize | plasma membrane | 73.84 | 69.91 |
| GSMUA_Achr3P17660_001 | Banana | cytosol, golgi, mitochondrion, plasma membrane | 72.19 | 69.43 |
| Os01t0850100-01 | Rice | cytosol, golgi, mitochondrion, plasma membrane | 74.17 | 68.71 |
| HORVU1Hr1G073060.1 | Barley | plasma membrane | 72.52 | 68.65 |
| HORVU1Hr1G073040.1 | Barley | plasma membrane | 72.52 | 68.65 |
| TraesCS3A01G365000.1 | Wheat | plasma membrane | 73.51 | 68.1 |
| TraesCS3B01G396900.1 | Wheat | golgi | 73.18 | 67.79 |
| TraesCS3D01G358200.1 | Wheat | golgi | 72.85 | 67.48 |
| Zm00001d041608_P001 | Maize | mitochondrion, plasma membrane | 69.87 | 67.41 |
| Os05t0287800-01 | Rice | mitochondrion | 69.87 | 67.41 |
| TraesCS1D01G279500.1 | Wheat | plasma membrane | 71.85 | 67.39 |
| Os05t0452900-02 | Rice | cytosol, golgi, mitochondrion, plasma membrane | 72.52 | 67.38 |
| KXG23698 | Sorghum | mitochondrion | 69.54 | 67.09 |
| TraesCS1B01G289300.1 | Wheat | plasma membrane | 71.52 | 67.08 |
| TraesCS1A01G280400.1 | Wheat | plasma membrane | 70.86 | 66.67 |
| EES01758 | Sorghum | mitochondrion | 71.19 | 66.36 |
| Zm00001d030613_P003 | Maize | mitochondrion, plasma membrane | 68.54 | 66.13 |
| Zm00001d012380_P002 | Maize | plasma membrane | 70.2 | 65.43 |
| CDY18431 | Canola | plasma membrane | 50.0 | 65.09 |
| Zm00001d042851_P003 | Maize | golgi, plasma membrane, plastid | 70.2 | 59.72 |
| HORVU3Hr1G085630.8 | Barley | plastid | 67.22 | 57.67 |
Protein Annotations
| EnsemblPlants:CDX76176 | EnsemblPlantsGene:GSBRNA2T00126479001 | GO:A0A078CG69 | InterPro:Sphingomyelin_synth-like_dom | PANTHER:PTHR21290 | PANTHER:PTHR21290:SF33 |
| PFAM:PF14360 | ProteinID:CDX76176 | ProteinID:CDX76176.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EEE8EF |
| MapMan:5.4.13.1 | : | : | : | : | : |
Description
BnaA04g04400D
Coordinates
chrLK031806:-:1610886..1613559
Molecular Weight (calculated)
34427.4 Da
IEP (calculated)
9.630
GRAVY (calculated)
0.203
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLYIRREAS KLWKRVCSEI ATEIGLLADN WKYLLAGLLC QYIHGLAARG VHYIHRPGPT LQDLGYILLP ELGQDKSYIS ETVFTCVFLS FVLWTFHPFI
101: IKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHSVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVL TYQKYGSKRF
201: IKLLGWIIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTVLLPVSS KDRTKEENHK LLNGNGVDPA DRRPRAQVNG NVGHTDNATN
301: GA
101: IKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHSVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVL TYQKYGSKRF
201: IKLLGWIIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTVLLPVSS KDRTKEENHK LLNGNGVDPA DRRPRAQVNG NVGHTDNATN
301: GA
001: MTLYIRREAS KLWRRFCSEI TTEIGLLAEN WKYLLAGLLC QYIHGLAARG VHYIHRPGPT LQDSGFFVLP ELGQDKGFIS ETVFTCVFLS FFLWTFHPFI
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT
Arabidopsis Description
IPCS1Phosphatidylinositol:ceramide inositolphosphotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M325]
SUBAcon: [mitochondrion,plasma membrane]
SUBAcon: [mitochondrion,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.