Factsheet for Zm00001d041608_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane
Any Predictor:	mitochondrion, secretory
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003674_P001
Zm00001d003675_P001
Zm00001d025412_P001
Zm00001d034777_P005

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54020.1	Zm00001d003674_P001	AT2G23420.1	21798944
AT3G54020.1	Zm00001d003675_P001	AT2G23420.1	21798944
AT3G54020.1	Zm00001d025412_P001	AT2G23420.1	21798944
AT3G54020.1	Zm00001d034777_P005	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG23698	Sorghum	mitochondrion	98.08	98.08
Zm00001d030613_P003	Maize	mitochondrion, plasma membrane	93.93	93.93
Zm00001d046198_P001	Maize	endoplasmic reticulum, plasma membrane	14.06	91.67
Os05t0287800-01	Rice	mitochondrion	87.22	87.22
VIT_08s0007g01510.t01	Wine grape	cytosol, golgi, mitochondrion, plasma membrane	70.93	70.25
CDX76176	Canola	mitochondrion	67.41	69.87
CDY13168	Canola	mitochondrion, plasma membrane	67.41	69.87
Bra014848.1-P	Field mustard	mitochondrion	67.09	69.54
AT3G54020.1	Thale cress	mitochondrion, plasma membrane	67.41	69.18
VIT_06s0004g05800.t01	Wine grape	mitochondrion	63.9	68.73
AT2G37940.1	Thale cress	mitochondrion, plasma membrane	66.13	67.87
KRH00099	Soybean	golgi	68.37	67.72
PGSC0003DMT400049398	Potato	plasma membrane	61.66	67.72
Bra000029.1-P	Field mustard	plasma membrane	63.9	67.57
KRG88789	Soybean	cytosol, golgi, mitochondrion, plasma membrane	67.73	67.52
Zm00001d038343_P001	Maize	plasma membrane	68.69	67.4
KRH49241	Soybean	mitochondrion	67.41	66.56
KRH75771	Soybean	cytosol, golgi, mitochondrion, peroxisome	66.77	66.56
CDY07761	Canola	mitochondrion, plasma membrane	65.18	66.23
CDY18417	Canola	plasma membrane	64.54	66.23
Bra017148.1-P	Field mustard	plasma membrane	64.54	66.23
Zm00001d012380_P002	Maize	plasma membrane	68.37	66.05
CDX93341	Canola	plasma membrane	64.22	65.9
CDY14501	Canola	mitochondrion, plasma membrane	64.86	65.7
CDY69104	Canola	mitochondrion, plasma membrane	64.86	65.7
PGSC0003DMT400028621	Potato	cytosol, golgi, plasma membrane	64.54	65.37
CDX74925	Canola	mitochondrion, plasma membrane	63.9	65.36
Solyc10g086690.1.1	Tomato	cytosol, golgi, mitochondrion, plasma membrane	61.02	65.19
Solyc10g084990.1.1	Tomato	cytosol, golgi, mitochondrion, plasma membrane	64.86	65.06
Bra005148.1-P	Field mustard	mitochondrion, plasma membrane	62.94	65.02
CDX91395	Canola	mitochondrion, plasma membrane	63.26	64.92
AT2G29525.1	Thale cress	plasma membrane	58.47	63.32
Solyc09g011740.2.1	Tomato	cytosol, endoplasmic reticulum, plasma membrane	63.58	62.97
PGSC0003DMT400052472	Potato	plasma membrane	62.94	62.34
Zm00001d042851_P003	Maize	golgi, plasma membrane, plastid	67.09	59.15
CDY18431	Canola	plasma membrane	39.94	53.88

Protein Annotations

EMBL:BT040771	EMBL:BT087716	EMBL:EU962271	EnsemblPlants:Zm00001d041608_P001	EnsemblPlants:Zm00001d041608_T001	EnsemblPlantsGene:Zm00001d041608
EntrezGene:100273314	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	InterPro:Sphingomyelin_synth-like_dom	PANTHER:PTHR21290	PANTHER:PTHR21290:SF33	PFAM:PF14360	ProteinID:ONM33367.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI00017B78F1	UniProt:B4FUI3	MapMan:5.4.13.1	:

Description

Phosphatidylinositol:ceramide inositolphosphotransferase 1

Coordinates

chr3:-:129601695..129605205

Molecular Weight (calculated)

35755.8 Da

IEP (calculated)

9.687

GRAVY (calculated)

0.139

Length

313 amino acids

Sequence
(BLAST)

001: MSPFYLARGA SKLVRRITSE TSVELKILSD KWRLLLAGLI FQYIHGLAAH GVHYLHRPGP TLQDLGFMIL PELGKERGYI SETLFTFVFL TFVLWTFHPF
101: ILQTKRFYTV LIWRRVLAFL CASQFLRIIT FYATQLPGPN YHCREGSPLA RLPPPQNAAE VFLINFPTGV IYGCGDLIFS SHMIFTLVFV ITYQKYGSIR
201: FCKMLAWCIA VAQSLLIICS RKHYSVDVVV AWYTVNLVVF FVDKKLTELP DRSVGSTSVL PVSARDKDTK LKEENTRLLN GNSMDSADRR PRTQMNGKQI
301: ENESHVDSET VKT

Best Arabidopsis Sequence Match ( AT2G37940.2 )
(BLAST)

001: MTLYIRRESS KLWKRFCSEI STEIGLLAEN WKYLLAGLIC QYIHGLAAKG VHYIHRPGPT LQDLGFFLLP ELGQERSYIS ETVFTSVFLS FFLWTFHPFI
101: LKTKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSKVSR LPWPKSALEV LEINPHGVMY GCGDLIFSSH MIFTLVFVRT YQKYGTKRFI
201: KLFGWLTAIV QSLLIIASRK HYSVDVVVAW YTVNLVVFCL DKKLPELPDR TAVLLPVISK DRTKEENHKL LNGNGVDPAD WRPRAQVNGK IDSNGVHTDN
301: TMNGA

Arabidopsis Description

IPCS2ERH1 [Source:UniProtKB/TrEMBL;Acc:A0A178VV03]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.